Two bugs combined to produce an empty agent-manifest.csv:
1. collectAgents() only scanned {module}/agents/ directories, but agents
live at various paths (bmm/1-analysis/bmad-agent-analyst/,
cis/skills/bmad-cis-agent-*, etc.). Now walks the full module tree.
2. All 9 BMM agent manifests declared type: skill instead of type: agent.
The manifest generator requires type: agent to include a directory in
agent-manifest.csv. CIS, GDS, TEA, and WDS already had the correct type.
Changes:
- Fix 9 BMM bmad-skill-manifest.yaml files: type: skill → type: agent
- Replace collectAgents/getAgentsFromDir with full-tree recursive scan
- Module field from manifest file always takes precedence over directory
- Remove dead skillManifest load (legacy .md agent support removed)
- Add TODO in bmad-artifacts.js documenting legacy agent pipeline as dead code
- Add 10 regression tests covering BMM, CIS, and GDS directory layouts
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