const path = require('node:path');
const fs = require('fs-extra');
const chalk = require('chalk');
const yaml = require('js-yaml');
const { DependencyResolver } = require('../installers/lib/core/dependency-resolver');
const { XmlHandler } = require('../lib/xml-handler');
const { YamlXmlBuilder } = require('../lib/yaml-xml-builder');
const { AgentPartyGenerator } = require('../lib/agent-party-generator');
const xml2js = require('xml2js');
const { getProjectRoot, getSourcePath, getModulePath } = require('../lib/project-root');

class WebBundler {
  constructor(sourceDir = null, outputDir = 'web-bundles') {
    this.sourceDir = sourceDir || getSourcePath();
    this.outputDir = path.isAbsolute(outputDir) ? outputDir : path.join(getProjectRoot(), outputDir);
    this.modulesPath = getSourcePath('modules');
    this.utilityPath = getSourcePath('utility');

    this.dependencyResolver = new DependencyResolver();
    this.xmlHandler = new XmlHandler();
    this.yamlBuilder = new YamlXmlBuilder();

    // Cache for resolved dependencies to avoid duplicates
    this.dependencyCache = new Map();

    // Discovered agents and teams for manifest generation
    this.discoveredAgents = [];
    this.discoveredTeams = [];

    // Temporary directory for generated manifests
    this.tempDir = path.join(process.cwd(), '.bundler-temp');
    this.tempManifestDir = path.join(this.tempDir, '.bmad', '_cfg');

    // Bundle statistics
    this.stats = {
      totalAgents: 0,
      bundledAgents: 0,
      skippedAgents: 0,
      failedAgents: 0,
      invalidXml: 0,
      warnings: [],
    };
  }

  /**
   * Main entry point to bundle all modules
   */
  async bundleAll() {
    console.log(chalk.cyan.bold('═══════════════════════════════════════════════'));
    console.log(chalk.cyan.bold('         🚀 Web Bundle Generation'));
    console.log(chalk.cyan.bold('═══════════════════════════════════════════════\n'));

    try {
      // Vendor cross-module workflows FIRST
      const modules = await this.discoverModules();
      for (const module of modules) {
        await this.vendorCrossModuleWorkflows(module);
      }

      // Pre-discover all modules to generate complete manifests
      for (const module of modules) {
        await this.preDiscoverModule(module);
      }

      // Create temporary manifest files
      await this.createTempManifests();

      // Process all modules
      for (const module of modules) {
        await this.bundleModule(module);
      }

      // Display summary
      this.displaySummary();
    } finally {
      // Clean up temp files
      await this.cleanupTempFiles();
    }
  }

  /**
   * Bundle a specific module
   */
  async bundleModule(moduleName) {
    const modulePath = path.join(this.modulesPath, moduleName);

    if (!(await fs.pathExists(modulePath))) {
      console.log(chalk.yellow(`Module ${moduleName} not found`));
      return { module: moduleName, agents: [], teams: [] };
    }

    console.log(chalk.bold(`\n📦 Bundling module: ${moduleName}`));

    const results = {
      module: moduleName,
      agents: [],
      teams: [],
    };

    // Vendor cross-module workflows first (if not already done by bundleAll)
    await this.vendorCrossModuleWorkflows(moduleName);

    // Pre-discover all agents and teams for manifest generation
    await this.preDiscoverModule(moduleName);

    // Ensure temp manifests exist (might not exist if called directly)
    if (!(await fs.pathExists(this.tempManifestDir))) {
      await this.createTempManifests();
    }

    // Process agents
    const agents = await this.discoverAgents(modulePath);
    for (const agent of agents) {
      try {
        await this.bundleAgent(moduleName, agent, false); // false = don't track again
        results.agents.push(agent);
      } catch (error) {
        console.error(`    Failed to bundle agent ${agent}:`, error.message);
      }
    }

    // Process teams
    const teams = await this.discoverTeams(modulePath);
    for (const team of teams) {
      try {
        await this.bundleTeam(moduleName, team);
        results.teams.push(team);
      } catch (error) {
        console.error(`    Failed to bundle team ${team}:`, error.message);
      }
    }

    return results;
  }

  /**
   * Bundle a single agent
   */
  async bundleAgent(moduleName, agentFile, shouldTrack = true) {
    const agentName = agentFile.endsWith('.agent.yaml') ? path.basename(agentFile, '.agent.yaml') : path.basename(agentFile, '.md');
    this.stats.totalAgents++;

    console.log(chalk.dim(`  → Processing: ${agentName}`));

    // Vendor cross-module workflows first (if not already done)
    await this.vendorCrossModuleWorkflows(moduleName);

    const agentPath = path.join(this.modulesPath, moduleName, 'agents', agentFile);

    // Check if agent file exists
    if (!(await fs.pathExists(agentPath))) {
      this.stats.failedAgents++;
      console.log(chalk.red(`    ✗ Agent file not found`));
      throw new Error(`Agent file not found: ${agentPath}`);
    }

    let content;
    let agentXml;

    // Handle YAML agents - build in-memory to XML
    if (agentFile.endsWith('.agent.yaml')) {
      // Check for webskip flag in YAML before building
      const yamlContent = await fs.readFile(agentPath, 'utf8');
      const agentYaml = yaml.load(yamlContent);

      if (agentYaml?.agent?.webskip === true) {
        this.stats.skippedAgents++;
        console.log(chalk.gray(`    ⊘ Skipped (webskip="true")`));
        return;
      }

      // Build agent from YAML (no customize file for web bundles)
      const xmlContent = await this.yamlBuilder.buildFromYaml(agentPath, null, {
        includeMetadata: false, // Don't include build metadata in web bundles
        forWebBundle: true, // Use web-specific activation fragments
      });

      content = xmlContent;
      agentXml = this.extractAgentXml(xmlContent);
    } else {
      // Legacy MD format - read and extract XML
      content = await fs.readFile(agentPath, 'utf8');
      agentXml = this.extractAgentXml(content);
    }

    if (!agentXml) {
      this.stats.failedAgents++;
      console.log(chalk.red(`    ✗ No agent XML found in ${agentFile}`));
      return;
    }

    // Check if agent has bundle="false" attribute
    if (this.shouldSkipBundling(agentXml)) {
      this.stats.skippedAgents++;
      console.log(chalk.gray(`    ⊘ Skipped (bundle="false")`));
      return;
    }

    // Process {project-root} references in agent XML
    agentXml = this.processProjectRootReferences(agentXml);

    // Track for manifest generation BEFORE generating manifests (if not pre-discovered)
    if (shouldTrack) {
      const agentDetails = AgentPartyGenerator.extractAgentDetails(content, moduleName, agentName);
      if (agentDetails) {
        this.discoveredAgents.push(agentDetails);
      }
    }

    // Resolve dependencies with warning tracking
    const dependencyWarnings = [];
    const { dependencies, skippedWorkflows } = await this.resolveAgentDependencies(agentXml, moduleName, dependencyWarnings);

    if (dependencyWarnings.length > 0) {
      this.stats.warnings.push({ agent: agentName, warnings: dependencyWarnings });
    }

    // Check for module's default-party.csv and include it as agent manifest
    const defaultPartyPath = path.join(this.modulesPath, moduleName, 'teams', 'default-party.csv');
    if (await fs.pathExists(defaultPartyPath)) {
      const partyContent = await fs.readFile(defaultPartyPath, 'utf8');
      // Process any placeholders in the CSV content
      const processedPartyContent = this.processProjectRootReferences(partyContent);
      // Wrap as text to preserve raw CSV format in CDATA
      const wrappedParty = this.wrapContentInXml(processedPartyContent, 'bmad/_cfg/agent-manifest.csv', 'text');
      dependencies.set('bmad/_cfg/agent-manifest.csv', wrappedParty);
      console.log(chalk.gray(`    + Added party manifest from module default-party.csv`));
    }

    // Remove commands for skipped workflows from agent XML
    if (skippedWorkflows.length > 0) {
      agentXml = this.removeSkippedWorkflowCommands(agentXml, skippedWorkflows);
    }

    // Build the bundle (no manifests for individual agents)
    const bundle = this.buildAgentBundle(agentXml, dependencies);

    // Validate XML
    const isValid = await this.validateXml(bundle);
    if (!isValid) {
      this.stats.invalidXml++;
      console.log(chalk.red(`    ⚠ Invalid XML generated!`));
    }

    // Format XML for readability
    const formattedBundle = this.formatXml(bundle);

    // Write bundle to output
    const outputPath = path.join(this.outputDir, moduleName, 'agents', `${agentName}.xml`);
    await fs.ensureDir(path.dirname(outputPath));
    await fs.writeFile(outputPath, formattedBundle, 'utf8');

    this.stats.bundledAgents++;
    const statusIcon = isValid ? chalk.green('✓') : chalk.yellow('⚠');
    console.log(`    ${statusIcon} Bundled: ${agentName}.xml${isValid ? '' : chalk.yellow(' (invalid XML)')}`);
  }

  /**
   * Bundle a team - includes orchestrator and all agents with their dependencies
   */
  async bundleTeam(moduleName, teamFile) {
    const teamName = path.basename(teamFile, path.extname(teamFile));
    console.log(chalk.dim(`  → Processing team: ${teamName}`));

    const teamPath = path.join(this.modulesPath, moduleName, 'teams', teamFile);

    // Check if team file exists
    if (!(await fs.pathExists(teamPath))) {
      console.log(chalk.red(`    ✗ Team file not found`));
      throw new Error(`Team file not found: ${teamPath}`);
    }

    // Read and parse team YAML
    const teamContent = await fs.readFile(teamPath, 'utf8');
    const teamConfig = yaml.load(teamContent);

    if (!teamConfig || !teamConfig.bundle) {
      console.log(chalk.red(`    ✗ Invalid team configuration`));
      return;
    }

    // Start building the team bundle
    const dependencies = new Map();
    const processed = new Set();
    const allAgentXmls = [];
    const warnings = [];

    // Check if team has a party CSV file (agent manifest)
    const hasPartyFile = teamConfig.party && teamConfig.party.endsWith('.csv');
    if (hasPartyFile) {
      // Load the party CSV and add it as bmad/_cfg/agent-manifest.csv
      const partyPath = path.join(path.dirname(teamPath), teamConfig.party.replace(/^\.\//, ''));
      if (await fs.pathExists(partyPath)) {
        const partyContent = await fs.readFile(partyPath, 'utf8');
        // Process any placeholders in the CSV content
        const processedPartyContent = this.processProjectRootReferences(partyContent);
        // Wrap as text/csv to preserve raw CSV format in CDATA
        const wrappedParty = this.wrapContentInXml(processedPartyContent, 'bmad/_cfg/agent-manifest.csv', 'text');
        dependencies.set('bmad/_cfg/agent-manifest.csv', wrappedParty);
        console.log(chalk.gray(`    + Added agent manifest from: ${teamConfig.party}`));
      } else {
        console.log(chalk.yellow(`    ⚠ Party file not found: ${partyPath}`));
      }
    }

    // 1. First, always add the bmad-web-orchestrator (XML file only, no transformation needed)
    const orchestratorXmlPath = path.join(this.sourceDir, 'core', 'agents', 'bmad-web-orchestrator.agent.xml');

    if (await fs.pathExists(orchestratorXmlPath)) {
      // Read the XML file directly - no transformation needed
      const xmlContent = await fs.readFile(orchestratorXmlPath, 'utf8');
      let orchestratorXml = xmlContent.trim();

      // Process {project-root} references
      orchestratorXml = this.processProjectRootReferences(orchestratorXml);

      // Inject help/exit menu items only (orchestrator has its own activation)
      orchestratorXml = this.injectHelpExitMenuItems(orchestratorXml);

      // Resolve orchestrator dependencies
      const { dependencies: orchDeps } = await this.resolveAgentDependencies(orchestratorXml, 'core', warnings);

      // Merge orchestrator dependencies
      for (const [id, content] of orchDeps) {
        if (!dependencies.has(id)) {
          dependencies.set(id, content);
        }
      }

      // Add orchestrator XML first
      allAgentXmls.push(orchestratorXml);
      console.log(chalk.gray(`    + Added orchestrator: bmad-web-orchestrator`));
    } else {
      console.log(chalk.yellow(`    ⚠ Orchestrator not found at: ${orchestratorXmlPath}`));
    }

    // 2. Determine which agents to include
    let agentsToBundle = [];

    if (teamConfig.agents === '*' || (Array.isArray(teamConfig.agents) && teamConfig.agents.includes('*'))) {
      // Include all agents from the module
      const agentsPath = path.join(this.modulesPath, moduleName, 'agents');
      if (await fs.pathExists(agentsPath)) {
        const agentFiles = await fs.readdir(agentsPath);
        agentsToBundle = agentFiles
          .filter((file) => file.endsWith('.agent.yaml') || (file.endsWith('.md') && !file.toLowerCase().includes('readme')))
          .map((file) => file.replace(/\.(agent\.yaml|md)$/, ''));
      }
    } else if (Array.isArray(teamConfig.agents)) {
      // Include specific agents listed
      agentsToBundle = teamConfig.agents;
    } else {
      console.log(chalk.yellow(`    ⚠ No agents specified in team configuration`));
    }

    // 3. Process each agent and their dependencies
    for (const agentName of agentsToBundle) {
      // Try YAML first, then MD
      let agentPath = path.join(this.modulesPath, moduleName, 'agents', `${agentName}.agent.yaml`);
      let isYaml = await fs.pathExists(agentPath);

      if (!isYaml) {
        agentPath = path.join(this.modulesPath, moduleName, 'agents', `${agentName}.md`);
        if (!(await fs.pathExists(agentPath))) {
          console.log(chalk.yellow(`    ⚠ Agent not found: ${agentName}`));
          continue;
        }
      }

      let agentXml;

      if (isYaml) {
        // Check for webskip flag in YAML
        const yamlContent = await fs.readFile(agentPath, 'utf8');
        const agentYaml = yaml.load(yamlContent);

        if (agentYaml?.agent?.webskip === true) {
          console.log(chalk.gray(`    ⊘ Skipped agent (webskip="true"): ${agentName}`));
          continue;
        }

        // Build YAML agent in-memory - skip activation for team agents (orchestrator handles it)
        const xmlContent = await this.yamlBuilder.buildFromYaml(agentPath, null, {
          includeMetadata: false,
          skipActivation: true, // Skip activation for team agents
        });
        agentXml = this.extractAgentXml(xmlContent);
      } else {
        // Read legacy MD agent
        const agentContent = await fs.readFile(agentPath, 'utf8');
        agentXml = this.extractAgentXml(agentContent);
      }

      if (!agentXml) {
        console.log(chalk.yellow(`    ⚠ No XML found in agent: ${agentName}`));
        continue;
      }

      // Skip agents with bundle="false"
      if (this.shouldSkipBundling(agentXml)) {
        console.log(chalk.gray(`    ⊘ Skipped agent (bundle="false"): ${agentName}`));
        continue;
      }

      // Process {project-root} references
      agentXml = this.processProjectRootReferences(agentXml);

      // Resolve agent dependencies
      const agentWarnings = [];
      const { dependencies: agentDeps, skippedWorkflows } = await this.resolveAgentDependencies(agentXml, moduleName, agentWarnings);

      if (agentWarnings.length > 0) {
        warnings.push({ agent: agentName, warnings: agentWarnings });
      }

      // Remove commands for skipped workflows from agent XML
      if (skippedWorkflows.length > 0) {
        agentXml = this.removeSkippedWorkflowCommands(agentXml, skippedWorkflows);
      }

      // Merge agent dependencies (deduplicate)
      for (const [id, content] of agentDeps) {
        if (!dependencies.has(id)) {
          dependencies.set(id, content);
        }
      }

      // Skip web activation injection for team agents - orchestrator handles everything
      // Only inject help/exit menu items if missing
      agentXml = this.injectHelpExitMenuItems(agentXml);

      // Add agent XML to the collection
      allAgentXmls.push(agentXml);
      console.log(chalk.gray(`    + Added agent: ${agentName}`));
    }

    // 4. Build the team bundle XML
    const bundle = this.buildTeamBundle(teamConfig.bundle, allAgentXmls, dependencies);

    // 5. Validate XML
    const isValid = await this.validateXml(bundle);
    if (!isValid) {
      console.log(chalk.red(`    ⚠ Invalid XML generated for team!`));
    }

    // Format XML for readability
    const formattedBundle = this.formatXml(bundle);

    // 6. Write bundle to output
    const outputPath = path.join(this.outputDir, moduleName, 'teams', `${teamName}.xml`);
    await fs.ensureDir(path.dirname(outputPath));
    await fs.writeFile(outputPath, formattedBundle, 'utf8');

    const statusIcon = isValid ? chalk.green('✓') : chalk.yellow('⚠');
    console.log(`    ${statusIcon} Bundled team: ${teamName}.xml${isValid ? '' : chalk.yellow(' (invalid XML)')}`);

    // Track warnings
    if (warnings.length > 0) {
      this.stats.warnings.push(...warnings);
    }
  }

  /**
   * Build the final team bundle XML
   */
  buildTeamBundle(teamMetadata, agentXmls, dependencies) {
    const parts = ['<?xml version="1.0" encoding="UTF-8"?>', '<team-bundle>', '  <!-- Agent Definitions -->', '  <agents>'];

    for (const agentXml of agentXmls) {
      // Indent each agent XML properly (add 4 spaces to each line)
      const indentedAgent = agentXml
        .split('\n')
        .map((line) => '    ' + line)
        .join('\n');
      parts.push(indentedAgent);
    }

    parts.push('  </agents>');

    // Add all dependencies
    if (dependencies && dependencies.size > 0) {
      parts.push('', '  <!-- Shared Dependencies -->', '  <dependencies>');

      for (const [id, content] of dependencies) {
        // All dependencies are now consistently wrapped in <file> elements
        // Indent properly (add 4 spaces to each line)
        const indentedContent = content
          .split('\n')
          .map((line) => '    ' + line)
          .join('\n');
        parts.push(indentedContent);
      }

      parts.push('  </dependencies>');
    }

    parts.push('</team-bundle>');

    return parts.join('\n');
  }

  /**
   * Vendor cross-module workflows for a module
   * Scans source agent YAML files for workflow-install attributes and copies workflows
   */
  async vendorCrossModuleWorkflows(moduleName) {
    const modulePath = path.join(this.modulesPath, moduleName);
    const agentsPath = path.join(modulePath, 'agents');

    if (!(await fs.pathExists(agentsPath))) {
      return;
    }

    // Find all agent YAML files
    const files = await fs.readdir(agentsPath);
    const yamlFiles = files.filter((f) => f.endsWith('.agent.yaml'));

    for (const agentFile of yamlFiles) {
      const agentPath = path.join(agentsPath, agentFile);
      const agentYaml = yaml.load(await fs.readFile(agentPath, 'utf8'));

      const menuItems = agentYaml?.agent?.menu || [];
      const workflowInstallItems = menuItems.filter((item) => item['workflow-install']);

      for (const item of workflowInstallItems) {
        const sourceWorkflowPath = item.workflow;
        const installWorkflowPath = item['workflow-install'];

        if (!sourceWorkflowPath || !installWorkflowPath) {
          continue;
        }

        // Parse paths to extract module and workflow location
        // Support both {project-root}/bmad/... and {project-root}/.bmad/... patterns
        const sourceMatch = sourceWorkflowPath.match(/\{project-root\}\/(?:\.?bmad)\/([^/]+)\/workflows\/(.+)/);
        const installMatch = installWorkflowPath.match(/\{project-root\}\/(?:\.?bmad)\/([^/]+)\/workflows\/(.+)/);

        if (!sourceMatch || !installMatch) {
          continue;
        }

        const sourceModule = sourceMatch[1];
        const sourceWorkflowRelPath = sourceMatch[2];
        const installModule = installMatch[1];
        const installWorkflowRelPath = installMatch[2];

        // Build actual filesystem paths
        const actualSourceWorkflowPath = path.join(this.modulesPath, sourceModule, 'workflows', sourceWorkflowRelPath);
        const actualDestWorkflowPath = path.join(this.modulesPath, installModule, 'workflows', installWorkflowRelPath);

        // Check if source workflow exists
        if (!(await fs.pathExists(actualSourceWorkflowPath))) {
          console.log(chalk.yellow(`    ⚠ Source workflow not found for vendoring: ${sourceWorkflowPath}`));
          continue;
        }

        // Check if destination already exists (skip if already vendored)
        if (await fs.pathExists(actualDestWorkflowPath)) {
          continue;
        }

        // Get workflow directory (workflow.yaml is in a directory with other files)
        const sourceWorkflowDir = path.dirname(actualSourceWorkflowPath);
        const destWorkflowDir = path.dirname(actualDestWorkflowPath);

        // Copy entire workflow directory
        await fs.copy(sourceWorkflowDir, destWorkflowDir, { overwrite: false });

        // Update config_source in the vendored workflow.yaml
        const workflowYamlPath = actualDestWorkflowPath;
        if (await fs.pathExists(workflowYamlPath)) {
          await this.updateWorkflowConfigSource(workflowYamlPath, installModule);
        }

        console.log(chalk.dim(`    → Vendored workflow: ${sourceWorkflowRelPath} → ${installModule}/workflows/${installWorkflowRelPath}`));
      }
    }
  }

  /**
   * Update config_source in a vendored workflow YAML file
   */
  async updateWorkflowConfigSource(workflowYamlPath, newModuleName) {
    let yamlContent = await fs.readFile(workflowYamlPath, 'utf8');

    // Replace config_source with new module reference
    // Support both old format (bmad) and new format (.bmad)
    const configSourcePattern = /config_source:\s*["']?\{project-root\}\/(?:\.?bmad)\/[^/]+\/config\.yaml["']?/g;
    const newConfigSource = `config_source: "{project-root}/.bmad/${newModuleName}/config.yaml"`;

    const updatedYaml = yamlContent.replaceAll(configSourcePattern, newConfigSource);
    await fs.writeFile(workflowYamlPath, updatedYaml, 'utf8');
  }

  /**
   * Pre-discover all agents and teams in a module for manifest generation
   */
  async preDiscoverModule(moduleName) {
    const modulePath = path.join(this.modulesPath, moduleName);

    // Clear any previously discovered agents for this module
    this.discoveredAgents = this.discoveredAgents.filter((a) => a.module !== moduleName);

    // Discover agents
    const agentsPath = path.join(modulePath, 'agents');
    if (await fs.pathExists(agentsPath)) {
      const files = await fs.readdir(agentsPath);
      for (const file of files) {
        if (file.endsWith('.agent.yaml') || (file.endsWith('.md') && !file.toLowerCase().includes('readme'))) {
          const agentPath = path.join(agentsPath, file);
          let content;

          if (file.endsWith('.agent.yaml')) {
            // Check for webskip flag in YAML
            const yamlContent = await fs.readFile(agentPath, 'utf8');
            const agentYaml = yaml.load(yamlContent);

            if (agentYaml?.agent?.webskip === true) {
              continue; // Skip this agent
            }

            // Build YAML agent in-memory
            content = await this.yamlBuilder.buildFromYaml(agentPath, null, {
              includeMetadata: false,
            });
          } else {
            // Read legacy MD agent
            content = await fs.readFile(agentPath, 'utf8');
          }

          const agentXml = this.extractAgentXml(content);

          if (agentXml) {
            // Skip agents with bundle="false"
            if (this.shouldSkipBundling(agentXml)) {
              continue;
            }

            const agentName = file.endsWith('.agent.yaml') ? path.basename(file, '.agent.yaml') : path.basename(file, '.md');
            // Use the shared generator to extract agent details (pass full content)
            const agentDetails = AgentPartyGenerator.extractAgentDetails(content, moduleName, agentName);
            if (agentDetails) {
              this.discoveredAgents.push(agentDetails);
            }
          }
        }
      }
    }

    // TODO: Discover teams when implemented
  }

  /**
   * Extract agent XML from markdown content
   */
  extractAgentXml(content) {
    // Try 4 backticks first (can contain 3 backtick blocks inside)
    let match = content.match(/````xml\s*([\s\S]*?)````/);
    if (!match) {
      // Fall back to 3 backticks if no 4-backtick block found
      match = content.match(/```xml\s*([\s\S]*?)```/);
    }

    if (match) {
      const xmlContent = match[1];
      const agentMatch = xmlContent.match(/<agent[^>]*>[\s\S]*?<\/agent>/);
      return agentMatch ? agentMatch[0] : null;
    }

    // Fall back to direct extraction
    match = content.match(/<agent[^>]*>[\s\S]*?<\/agent>/);
    return match ? match[0] : null;
  }

  /**
   * Resolve all dependencies for an agent
   */
  async resolveAgentDependencies(agentXml, moduleName, warnings = []) {
    const dependencies = new Map();
    const processed = new Set();
    const skippedWorkflows = [];

    // Extract file references from agent XML
    const { refs, workflowRefs } = this.extractFileReferences(agentXml);

    // Process regular file references
    for (const ref of refs) {
      await this.processFileDependency(ref, dependencies, processed, moduleName, warnings);
    }

    // Process workflow references with special handling
    for (const workflowRef of workflowRefs) {
      const result = await this.processWorkflowDependency(workflowRef, dependencies, processed, moduleName, warnings);
      if (result && result.skipped) {
        skippedWorkflows.push(workflowRef);
      }
    }

    return { dependencies, skippedWorkflows };
  }

  /**
   * Extract file references from agent XML
   */
  extractFileReferences(xml) {
    const refs = new Set();
    const workflowRefs = new Set();

    // Remove agent id attribute to prevent it from being treated as a dependency
    // The id attribute is just a metadata identifier, not a file reference
    const xmlWithoutAgentId = xml.replace(/<agent[^>]*id="[^"]*"[^>]*>/, (match) => {
      return match.replace(/\sid="[^"]*"/, '');
    });

    // Match various file reference patterns
    const patterns = [
      /exec="([^"]+)"/g, // Command exec paths
      /tmpl="([^"]+)"/g, // Template paths
      /data="([^"]+)"/g, // Data file paths
      /file="([^"]+)"/g, // Generic file refs
      /src="([^"]+)"/g, // Source paths
      /system-prompts="([^"]+)"/g,
      /tools="([^"]+)"/g,
      /knowledge="([^"]+)"/g,
      /{project-root}\/([^"'\s<>]+)/g, // Legacy {project-root} paths
      /\bbmad\/([^"'\s<>]+)/g, // Direct bmad/ paths (after .bmad replacement)
    ];

    for (const pattern of patterns) {
      let match;
      // Use the XML with agent id removed for pattern matching
      while ((match = pattern.exec(xmlWithoutAgentId)) !== null) {
        let filePath = match[1];
        // Remove {project-root} prefix if present
        filePath = filePath.replace(/^{project-root}\//, '');
        // Remove .bmad prefix if present (should be rare, mostly replaced already)
        filePath = filePath.replace(/^.bmad\//, 'bmad/');

        // For bmad/ pattern, prepend 'bmad/' since it was captured without it
        if (pattern.source.includes(String.raw`\bbmad\/`)) {
          filePath = 'bmad/' + filePath;
        }

        // Skip obvious placeholder/example paths
        if (filePath && !filePath.includes('path/to/') && !filePath.includes('example') && !filePath.includes('...')) {
          refs.add(filePath);
        }
      }
    }

    // Extract workflow references from agent files
    const workflowPatterns = [
      /workflow="([^"]+)"/g, // Menu items with workflow attribute
      /validate-workflow="([^"]+)"/g, // Validation workflow references
    ];

    for (const pattern of workflowPatterns) {
      let match;
      // Use original xml for workflow patterns (they don't conflict with agent id)
      while ((match = pattern.exec(xml)) !== null) {
        let workflowPath = match[1];
        workflowPath = workflowPath.replace(/^{project-root}\//, '');
        // Remove .bmad prefix if present and replace with bmad
        workflowPath = workflowPath.replace(/^.bmad\//, 'bmad/');

        // Skip obvious placeholder/example paths
        if (workflowPath && workflowPath.endsWith('.yaml') && !workflowPath.includes('path/to/') && !workflowPath.includes('example')) {
          workflowRefs.add(workflowPath);
        }
      }
    }

    return { refs: [...refs], workflowRefs: [...workflowRefs] };
  }

  /**
   * Remove commands from agent XML that reference skipped workflows
   */
  removeSkippedWorkflowCommands(agentXml, skippedWorkflows) {
    let modifiedXml = agentXml;

    // For each skipped workflow, find and remove menu items and commands
    for (const workflowPath of skippedWorkflows) {
      // Need to escape special regex characters in the path
      const escapedPath = workflowPath.replaceAll(/[.*+?^${}()|[\]\\]/g, String.raw`\$&`);

      // Pattern 1: Remove <item> tags with workflow attribute
      // Match: <item cmd="..." workflow="workflowPath">...</item>
      const itemWorkflowPattern = new RegExp(`\\s*<item\\s+[^>]*workflow="[^"]*${escapedPath}"[^>]*>.*?</item>\\s*`, 'gs');
      modifiedXml = modifiedXml.replace(itemWorkflowPattern, '');
    }

    return modifiedXml;
  }

  /**
   * Process a file dependency recursively
   */
  async processFileDependency(filePath, dependencies, processed, moduleName, warnings = []) {
    // Skip workflow YAML files - they're handled by processWorkflowDependency
    if (filePath.includes('/workflow') && filePath.endsWith('workflow.yaml')) {
      return;
    }

    // Skip if already processed
    if (processed.has(filePath)) {
      return;
    }
    processed.add(filePath);

    // Skip agent-manifest.csv manifest for web bundles (agents are already bundled)
    if (filePath === 'bmad/_cfg/agent-manifest.csv' || filePath.endsWith('/agent-manifest.csv')) {
      return;
    }

    // Handle wildcard patterns
    if (filePath.includes('*')) {
      await this.processWildcardDependency(filePath, dependencies, processed, moduleName, warnings);
      return;
    }

    // Resolve actual file path
    const actualPath = this.resolveFilePath(filePath, moduleName);

    if (!actualPath || !(await fs.pathExists(actualPath))) {
      warnings.push(filePath);
      return;
    }

    // Skip if it's a directory
    const stats = await fs.stat(actualPath);
    if (stats.isDirectory()) {
      // Silently skip directories - they're not file dependencies
      return;
    }

    // Read file content
    let content = await fs.readFile(actualPath, 'utf8');

    // Process {project-root} references
    content = this.processProjectRootReferences(content);

    // Extract dependencies from frontmatter if present
    const frontmatterMatch = content.match(/^---\s*\n([\s\S]*?)\n---/);
    if (frontmatterMatch) {
      const frontmatter = frontmatterMatch[1];
      // Look for dependencies in frontmatter
      const depMatch = frontmatter.match(/dependencies:\s*\[(.*?)\]/);
      if (depMatch) {
        const deps = depMatch[1].match(/['"]([^'"]+)['"]/g);
        if (deps) {
          for (const dep of deps) {
            let depPath = dep.replaceAll(/['"]/g, '').replace(/^{project-root}\//, '');
            depPath = depPath.replace(/^.bmad\//, 'bmad/');
            if (depPath && !processed.has(depPath)) {
              await this.processFileDependency(depPath, dependencies, processed, moduleName, warnings);
            }
          }
        }
      }
      // Look for template references
      const templateMatch = frontmatter.match(/template:\s*\[(.*?)\]/);
      if (templateMatch) {
        const templates = templateMatch[1].match(/['"]([^'"]+)['"]/g);
        if (templates) {
          for (const template of templates) {
            let templatePath = template.replaceAll(/['"]/g, '').replace(/^{project-root}\//, '');
            templatePath = templatePath.replace(/^.bmad\//, 'bmad/');
            if (templatePath && !processed.has(templatePath)) {
              await this.processFileDependency(templatePath, dependencies, processed, moduleName, warnings);
            }
          }
        }
      }
    }

    // Extract XML from markdown if applicable
    const ext = path.extname(actualPath).toLowerCase();
    let processedContent = content;

    switch (ext) {
      case '.md': {
        // Try to extract XML from markdown - handle both 3 and 4 backtick blocks
        // First try 4 backticks (which can contain 3 backtick blocks inside)
        let xmlMatches = [...content.matchAll(/````xml\s*([\s\S]*?)````/g)];

        // If no 4-backtick blocks, try 3 backticks
        if (xmlMatches.length === 0) {
          xmlMatches = [...content.matchAll(/```xml\s*([\s\S]*?)```/g)];
        }

        const xmlBlocks = [];

        for (const match of xmlMatches) {
          if (match[1]) {
            xmlBlocks.push(match[1].trim());
          }
        }

        if (xmlBlocks.length > 0) {
          // For XML content, just include it directly (it's already valid XML)
          processedContent = xmlBlocks.join('\n\n');
        } else {
          // No XML blocks found, skip non-XML markdown files
          return;
        }

        break;
      }
      case '.csv': {
        // CSV files need special handling - convert to XML file-index
        const lines = content.split('\n').filter((line) => line.trim());
        if (lines.length === 0) return;

        const headers = lines[0].split(',').map((h) => h.trim());
        const rows = lines.slice(1);

        const indexParts = [`<file-index id="${filePath}">`];
        indexParts.push('  <items>');

        // Track files referenced in CSV for additional bundling
        const referencedFiles = new Set();

        for (const row of rows) {
          const values = row.split(',').map((v) => v.trim());
          if (values.every((v) => !v)) continue;

          indexParts.push('    <item>');
          for (const [i, header] of headers.entries()) {
            const value = values[i] || '';
            const tagName = header.toLowerCase().replaceAll(/[^a-z0-9]/g, '_');
            indexParts.push(`      <${tagName}>${value}</${tagName}>`);

            // Track referenced files
            if (header.toLowerCase().includes('file') && value.endsWith('.md')) {
              // Build path relative to CSV location
              const csvDir = path.dirname(actualPath);
              const refPath = path.join(csvDir, value);
              if (fs.existsSync(refPath)) {
                const refId = filePath.replace('index.csv', value);
                referencedFiles.add(refId);
              }
            }
          }
          indexParts.push('    </item>');
        }

        indexParts.push('  </items>', '</file-index>');

        // Store the XML version wrapped in a file element
        const csvXml = indexParts.join('\n');
        const wrappedCsv = `<file id="${filePath}" type="xml">\n${csvXml}\n</file>`;
        dependencies.set(filePath, wrappedCsv);

        // Process referenced files from CSV
        for (const refId of referencedFiles) {
          if (!processed.has(refId)) {
            await this.processFileDependency(refId, dependencies, processed, moduleName, warnings);
          }
        }

        return;
      }
      case '.xml': {
        // XML files can be included directly
        processedContent = content;
        break;
      }
      default: {
        // For other non-XML file types, skip them
        return;
      }
    }

    // Determine file type for wrapping
    let fileType = 'text';
    if (ext === '.xml' || (ext === '.md' && processedContent.trim().startsWith('<'))) {
      fileType = 'xml';
    } else
      switch (ext) {
        case '.yaml':
        case '.yml': {
          fileType = 'yaml';

          break;
        }
        case '.json': {
          fileType = 'json';

          break;
        }
        case '.md': {
          fileType = 'md';

          break;
        }
        // No default
      }

    // Wrap content in file element and store
    const wrappedContent = this.wrapContentInXml(processedContent, filePath, fileType);
    dependencies.set(filePath, wrappedContent);

    // Recursively scan for more dependencies
    const { refs: nestedRefs } = this.extractFileReferences(processedContent);
    for (const ref of nestedRefs) {
      await this.processFileDependency(ref, dependencies, processed, moduleName, warnings);
    }
  }

  /**
   * Process a workflow YAML file and its bundle files
   */
  async processWorkflowDependency(workflowPath, dependencies, processed, moduleName, warnings = []) {
    // Skip if already processed
    if (processed.has(workflowPath)) {
      return { skipped: false };
    }
    processed.add(workflowPath);

    // Resolve actual file path
    const actualPath = this.resolveFilePath(workflowPath, moduleName);

    if (!actualPath || !(await fs.pathExists(actualPath))) {
      warnings.push(workflowPath);
      return { skipped: true };
    }

    // Read and parse YAML file
    const yamlContent = await fs.readFile(actualPath, 'utf8');
    let workflowConfig;

    try {
      workflowConfig = yaml.load(yamlContent);
    } catch (error) {
      warnings.push(`${workflowPath} (invalid YAML: ${error.message})`);
      return { skipped: true };
    }

    // Check if web_bundle is explicitly set to false
    if (workflowConfig.web_bundle === false) {
      // Mark this workflow as skipped so we can remove the command from agent
      return { skipped: true, workflowPath };
    }

    // Create YAML content with only web_bundle section (flattened)
    let bundleYamlContent;
    if (workflowConfig.web_bundle && typeof workflowConfig.web_bundle === 'object') {
      // Only include the web_bundle content, flattened to root level
      bundleYamlContent = yaml.dump(workflowConfig.web_bundle);
    } else {
      // If no web_bundle section, include full YAML
      bundleYamlContent = yamlContent;
    }

    // Process {project-root} and .bmad references in the YAML content
    bundleYamlContent = this.processProjectRootReferences(bundleYamlContent);

    // Include the YAML file with only web_bundle content, wrapped in XML
    // Process the workflow path to create a clean ID
    let yamlId = workflowPath.replace(/^{project-root}\//, '');
    yamlId = yamlId.replace(/^.bmad\//, 'bmad/');
    const wrappedYaml = this.wrapContentInXml(bundleYamlContent, yamlId, 'yaml');
    dependencies.set(yamlId, wrappedYaml);

    // Always include core workflow task when processing workflows
    await this.includeCoreWorkflowFiles(dependencies, processed, moduleName, warnings);

    // Check if advanced elicitation is enabled
    if (workflowConfig.web_bundle && workflowConfig.web_bundle.use_advanced_elicitation) {
      await this.includeAdvancedElicitationFiles(dependencies, processed, moduleName, warnings);
    }

    // Process web_bundle_files if they exist
    if (workflowConfig.web_bundle && workflowConfig.web_bundle.web_bundle_files) {
      const bundleFiles = workflowConfig.web_bundle.web_bundle_files;

      for (const bundleFilePath of bundleFiles) {
        // Process the file path to create a clean ID for checking if already processed
        let cleanFilePath = bundleFilePath.replace(/^{project-root}\//, '');
        cleanFilePath = cleanFilePath.replace(/^.bmad\//, 'bmad/');

        if (processed.has(cleanFilePath)) {
          continue;
        }

        const bundleActualPath = this.resolveFilePath(bundleFilePath, moduleName);

        if (!bundleActualPath || !(await fs.pathExists(bundleActualPath))) {
          // Use the cleaned path in warnings (with .bmad replaced)
          warnings.push(cleanFilePath);
          continue;
        }

        // Check if this is another workflow.yaml file - if so, recursively process it
        if (bundleFilePath.endsWith('workflow.yaml')) {
          // Recursively process this workflow and its dependencies
          await this.processWorkflowDependency(bundleFilePath, dependencies, processed, moduleName, warnings);
        } else {
          // Regular file - process normally
          processed.add(cleanFilePath);

          // Read the file content
          let fileContent = await fs.readFile(bundleActualPath, 'utf8');
          const fileExt = path.extname(bundleActualPath).toLowerCase().replace('.', '');

          // Process {project-root} references before wrapping
          fileContent = this.processProjectRootReferences(fileContent);

          // Wrap in XML with proper escaping
          const wrappedContent = this.wrapContentInXml(fileContent, cleanFilePath, fileExt);
          dependencies.set(cleanFilePath, wrappedContent);
        }
      }
    }

    return { skipped: false };
  }

  /**
   * Include core workflow task files
   */
  async includeCoreWorkflowFiles(dependencies, processed, moduleName, warnings = []) {
    const coreWorkflowPath = 'bmad/core/tasks/workflow.xml';

    if (processed.has(coreWorkflowPath)) {
      return;
    }
    processed.add(coreWorkflowPath);

    const actualPath = this.resolveFilePath(coreWorkflowPath, moduleName);

    if (!actualPath || !(await fs.pathExists(actualPath))) {
      warnings.push(coreWorkflowPath);
      return;
    }

    let fileContent = await fs.readFile(actualPath, 'utf8');
    // Process {project-root} and .bmad references
    fileContent = this.processProjectRootReferences(fileContent);
    const wrappedContent = this.wrapContentInXml(fileContent, coreWorkflowPath, 'xml');
    dependencies.set(coreWorkflowPath, wrappedContent);
  }

  /**
   * Include advanced elicitation files
   */
  async includeAdvancedElicitationFiles(dependencies, processed, moduleName, warnings = []) {
    const elicitationFiles = ['bmad/core/tasks/advanced-elicitation.xml', 'bmad/core/tasks/advanced-elicitation-methods.csv'];

    for (const filePath of elicitationFiles) {
      if (processed.has(filePath)) {
        continue;
      }
      processed.add(filePath);

      const actualPath = this.resolveFilePath(filePath, moduleName);

      if (!actualPath || !(await fs.pathExists(actualPath))) {
        warnings.push(filePath);
        continue;
      }

      let fileContent = await fs.readFile(actualPath, 'utf8');
      // Process {project-root} and .bmad references
      fileContent = this.processProjectRootReferences(fileContent);
      const fileExt = path.extname(actualPath).toLowerCase().replace('.', '');
      const wrappedContent = this.wrapContentInXml(fileContent, filePath, fileExt);
      dependencies.set(filePath, wrappedContent);
    }
  }

  /**
   * Wrap file content in XML with proper escaping
   */
  wrapContentInXml(content, id, type = 'text') {
    // For XML files, include directly without CDATA (they're already valid XML)
    if (type === 'xml') {
      // XML files can be included directly as they're already well-formed
      // Just wrap in a file element
      return `<file id="${id}" type="${type}">\n${content}\n</file>`;
    }

    // For all other file types, use CDATA to preserve content exactly
    // Escape any ]]> sequences in the content by splitting CDATA sections
    // Replace ]]> with ]]]]><![CDATA[> to properly escape it within CDATA
    const escapedContent = content.replaceAll(']]>', ']]]]><![CDATA[>');

    // Use CDATA to preserve content exactly as-is, including special characters
    return `<file id="${id}" type="${type}"><![CDATA[${escapedContent}]]></file>`;
  }

  /**
   * Process wildcard dependency patterns
   */
  async processWildcardDependency(pattern, dependencies, processed, moduleName, warnings = []) {
    // Remove {project-root} prefix
    pattern = pattern.replace(/^{project-root}\//, '');
    // Replace .bmad with bmad
    pattern = pattern.replace(/^.bmad\//, 'bmad/');

    // Get directory and file pattern
    const lastSlash = pattern.lastIndexOf('/');
    const dirPath = pattern.slice(0, Math.max(0, lastSlash));
    const filePattern = pattern.slice(Math.max(0, lastSlash + 1));

    // Resolve directory path without checking file existence
    let dir;
    if (dirPath.startsWith('bmad/')) {
      // Remove bmad/ prefix
      const actualPath = dirPath.replace(/^bmad\//, '');

      // Try different path mappings for directories
      const possibleDirs = [
        // Try as module path: bmad/cis/... -> src/modules/cis/...
        path.join(this.sourceDir, 'modules', actualPath),
        // Try as direct path: bmad/core/... -> src/core/...
        path.join(this.sourceDir, actualPath),
      ];

      for (const testDir of possibleDirs) {
        if (fs.existsSync(testDir)) {
          dir = testDir;
          break;
        }
      }
    }

    if (!dir) {
      warnings.push(`${pattern} (could not resolve directory)`);
      return;
    }
    if (!(await fs.pathExists(dir))) {
      warnings.push(pattern);
      return;
    }

    // Read directory and match files
    const files = await fs.readdir(dir);
    let matchedFiles = [];

    if (filePattern === '*.*') {
      matchedFiles = files;
    } else if (filePattern.startsWith('*.')) {
      const ext = filePattern.slice(1);
      matchedFiles = files.filter((f) => f.endsWith(ext));
    } else {
      // Simple glob matching
      const regex = new RegExp('^' + filePattern.replace('*', '.*') + '$');
      matchedFiles = files.filter((f) => regex.test(f));
    }

    // Process each matched file
    for (const file of matchedFiles) {
      const fullPath = dirPath + '/' + file;
      if (!processed.has(fullPath)) {
        await this.processFileDependency(fullPath, dependencies, processed, moduleName, warnings);
      }
    }
  }

  /**
   * Resolve file path relative to project
   */
  resolveFilePath(filePath, moduleName) {
    // Remove {project-root} prefix
    filePath = filePath.replace(/^{project-root}\//, '');

    // Check temp directory first for _cfg files
    if (filePath.startsWith('bmad/_cfg/')) {
      const filename = filePath.split('/').pop();
      const tempPath = path.join(this.tempManifestDir, filename);
      if (fs.existsSync(tempPath)) {
        return tempPath;
      }
    }

    let actualPath = filePath;

    if (filePath.startsWith('bmad/')) {
      // Remove bmad/ prefix
      actualPath = filePath.replace(/^bmad\//, '');

      // Check if it's a module-specific file (cis, bmm, etc) or core file
      const parts = actualPath.split('/');
      const firstPart = parts[0];

      // Try different path mappings
      const possiblePaths = [
        // Try in temp directory first
        path.join(this.tempDir, filePath),
        // Try as module path: bmad/cis/... -> src/modules/cis/...
        path.join(this.sourceDir, 'modules', actualPath),
        // Try as direct path: bmad/core/... -> src/core/...
        path.join(this.sourceDir, actualPath),
        // Try without any prefix in src
        path.join(this.sourceDir, parts.slice(1).join('/')),
        // Try in project root
        path.join(this.sourceDir, '..', actualPath),
        // Try original with bmad
        path.join(this.sourceDir, '..', filePath),
      ];

      for (const testPath of possiblePaths) {
        if (fs.existsSync(testPath)) {
          return testPath;
        }
      }
    }

    // Try standard paths for non-bmad files
    const basePaths = [
      this.sourceDir, // src directory
      path.join(this.modulesPath, moduleName), // Current module
      path.join(this.sourceDir, '..'), // Project root
    ];

    for (const basePath of basePaths) {
      const fullPath = path.join(basePath, actualPath);
      if (fs.existsSync(fullPath)) {
        return fullPath;
      }
    }

    return null;
  }

  /**
   * Process and remove {project-root} references
   */
  processProjectRootReferences(content) {
    // Remove {project-root}/ prefix (with slash)
    content = content.replaceAll('{project-root}/', '');
    // Also remove {project-root} without slash
    content = content.replaceAll('{project-root}', '');
    return content;
  }

  /**
   * Escape special XML characters in text content
   */
  escapeXmlText(text) {
    return text
      .replaceAll('&', '&amp;')
      .replaceAll('<', '&lt;')
      .replaceAll('>', '&gt;')
      .replaceAll('"', '&quot;')
      .replaceAll("'", '&apos;');
  }

  /**
   * Escape XML content while preserving XML tags
   */
  escapeXmlContent(content) {
    const tagPattern = /<([^>]+)>/g;
    const parts = [];
    let lastIndex = 0;
    let match;

    while ((match = tagPattern.exec(content)) !== null) {
      if (match.index > lastIndex) {
        parts.push(this.escapeXmlText(content.slice(lastIndex, match.index)));
      }
      parts.push('<' + match[1] + '>');
      lastIndex = match.index + match[0].length;
    }

    if (lastIndex < content.length) {
      parts.push(this.escapeXmlText(content.slice(lastIndex)));
    }

    return parts.join('');
  }

  /**
   * Inject help and exit menu items into agent XML
   */
  injectHelpExitMenuItems(agentXml) {
    // Check if menu already has help and exit
    const hasHelp = agentXml.includes('cmd="*help"') || agentXml.includes('trigger="*help"');
    const hasExit = agentXml.includes('cmd="*exit"') || agentXml.includes('trigger="*exit"');

    if (hasHelp && hasExit) {
      return agentXml; // Already has both, skip injection
    }

    // Find the menu section
    const menuMatch = agentXml.match(/(<menu>[\s\S]*?<\/menu>)/);
    if (!menuMatch) {
      return agentXml; // No menu found, skip injection
    }

    const menuContent = menuMatch[1];
    const menuClosingMatch = menuContent.match(/(\s*)<\/menu>/);
    if (!menuClosingMatch) {
      return agentXml;
    }

    const indent = menuClosingMatch[1];
    const menuItems = [];

    if (!hasHelp) {
      menuItems.push(`${indent}<item cmd="*menu">[M] Redisplay Menu Options</item>`);
    }

    if (!hasExit) {
      menuItems.push(`${indent}<item cmd="*dismiss">[D] Dismiss Agent</item>`);
    }

    if (menuItems.length === 0) {
      return agentXml;
    }

    // Inject menu items before closing </menu> tag
    const newMenuContent = menuContent.replace(/(\s*)<\/menu>/, `\n${menuItems.join('\n')}\n${indent}</menu>`);
    return agentXml.replace(menuContent, newMenuContent);
  }

  /**
   * Inject web activation instructions into agent XML
   */
  injectWebActivation(agentXml) {
    // First, always inject help/exit menu items
    agentXml = this.injectHelpExitMenuItems(agentXml);

    // Load the web activation template
    const activationPath = path.join(this.sourceDir, 'utility', 'models', 'agent-activation-web.xml');

    if (!fs.existsSync(activationPath)) {
      console.warn(chalk.yellow('Warning: agent-activation-web.xml not found, skipping activation injection'));
      return agentXml;
    }

    const activationXml = fs.readFileSync(activationPath, 'utf8');

    // For web bundles, ALWAYS replace existing activation with web activation
    // This is because fragment-based activation assumes filesystem access which won't work in web bundles
    const hasActivation = agentXml.includes('<activation');

    if (hasActivation) {
      // Replace existing activation block with web activation
      const injectedXml = agentXml.replace(/<activation[^>]*>[\s\S]*?<\/activation>/, activationXml);
      return injectedXml;
    }

    // Check for critical-actions block (legacy)
    const hasCriticalActions = agentXml.includes('<critical-actions');

    if (hasCriticalActions) {
      // Replace critical-actions block with activation
      const injectedXml = agentXml.replace(/<critical-actions>[\s\S]*?<\/critical-actions>/, activationXml);
      return injectedXml;
    }

    // If no critical-actions, inject before closing </agent> tag
    const closingTagMatch = agentXml.match(/(\s*)<\/agent>/);
    if (!closingTagMatch) {
      console.warn(chalk.yellow('Warning: Could not find </agent> tag for activation injection'));
      return agentXml;
    }

    // Inject the activation block before the closing </agent> tag
    // Properly indent each line of the activation XML
    const indent = closingTagMatch[1];
    const indentedActivation = activationXml
      .split('\n')
      .map((line) => (line.trim() ? indent + line : ''))
      .join('\n');

    const injectedXml = agentXml.replace(/(\s*)<\/agent>/, `\n${indentedActivation}\n${indent}</agent>`);

    return injectedXml;
  }

  /**
   * Build the final agent bundle XML
   */
  buildAgentBundle(agentXml, dependencies) {
    // Web activation is now handled by fragments during YAML building
    // agentXml = this.injectWebActivation(agentXml);

    const parts = [
      '<?xml version="1.0" encoding="UTF-8"?>',
      '<agent-bundle>',
      '  <!-- Agent Definition -->',
      '  ' + agentXml.replaceAll('\n', '\n  '),
    ];

    // Add dependencies (all are now consistently wrapped in <file> elements)
    if (dependencies && dependencies.size > 0) {
      parts.push('\n  <!-- Dependencies -->');
      for (const [id, content] of dependencies) {
        // All dependencies are now wrapped in <file> elements
        // Indent properly
        const indentedContent = content
          .split('\n')
          .map((line) => '  ' + line)
          .join('\n');
        parts.push(indentedContent);
      }
    }

    parts.push('</agent-bundle>');

    return parts.join('\n');
  }

  /**
   * Discover all modules
   */
  async discoverModules() {
    const modules = [];

    if (!(await fs.pathExists(this.modulesPath))) {
      console.log(chalk.yellow('No modules directory found'));
      return modules;
    }

    const entries = await fs.readdir(this.modulesPath, { withFileTypes: true });

    for (const entry of entries) {
      if (entry.isDirectory()) {
        modules.push(entry.name);
      }
    }

    return modules;
  }

  /**
   * Discover agents in a module
   */
  async discoverAgents(modulePath) {
    const agents = [];
    const agentsPath = path.join(modulePath, 'agents');

    if (!(await fs.pathExists(agentsPath))) {
      return agents;
    }

    const files = await fs.readdir(agentsPath);

    for (const file of files) {
      // Look for .agent.yaml files (new format) or .md files (legacy format)
      if (file.endsWith('.agent.yaml') || (file.endsWith('.md') && !file.toLowerCase().includes('readme'))) {
        agents.push(file);
      }
    }

    return agents;
  }

  /**
   * Discover all teams in a module
   */
  async discoverTeams(modulePath) {
    const teams = [];
    const teamsPath = path.join(modulePath, 'teams');

    if (!(await fs.pathExists(teamsPath))) {
      return teams;
    }

    const files = await fs.readdir(teamsPath);

    for (const file of files) {
      if (file.endsWith('.yaml') || file.endsWith('.yml')) {
        teams.push(file);
      }
    }

    return teams;
  }

  /**
   * Extract agent name from XML
   */
  getAgentName(xml) {
    const match = xml.match(/<agent[^>]*name="([^"]+)"/);
    return match ? match[1] : 'Unknown';
  }

  /**
   * Extract agent description from XML
   */
  getAgentDescription(xml) {
    const match = xml.match(/<description>([^<]+)<\/description>/);
    return match ? match[1] : '';
  }

  /**
   * Check if agent should be skipped for bundling
   */
  shouldSkipBundling(xml) {
    // Check for bundle="false" attribute in the agent tag
    const match = xml.match(/<agent[^>]*bundle="false"[^>]*>/);
    return match !== null;
  }

  /**
   * Create temporary manifest files
   */
  async createTempManifests() {
    // Ensure temp directory exists
    await fs.ensureDir(this.tempManifestDir);

    // Generate agent-manifest.csv using shared generator
    const agentPartyPath = path.join(this.tempManifestDir, 'agent-manifest.csv');
    await AgentPartyGenerator.writeAgentParty(agentPartyPath, this.discoveredAgents, { forWeb: true });

    console.log(chalk.dim('  ✓ Created temporary manifest files'));
  }

  /**
   * Clean up temporary files
   */
  async cleanupTempFiles() {
    if (await fs.pathExists(this.tempDir)) {
      await fs.remove(this.tempDir);
      console.log(chalk.dim('\n✓ Cleaned up temporary files'));
    }
  }

  /**
   * Validate XML content
   */
  async validateXml(xmlContent) {
    try {
      await xml2js.parseStringPromise(xmlContent, {
        strict: true,
        explicitArray: false,
      });
      return true;
    } catch {
      return false;
    }
  }

  /**
   * Format XML content for readability
   */
  formatXml(xml) {
    const TAB = '  '; // 2 spaces
    let result = '';
    let depth = 0;

    // Split by tags while preserving them
    const parts = xml.split(/(<[^>]+>)/g);

    for (let i = 0; i < parts.length; i++) {
      const part = parts[i];
      if (!part) continue;

      if (part.startsWith('<?xml')) {
        // XML declaration - no indent
        result += part + '\n';
      } else if (part.startsWith('<!--')) {
        // Comment
        result += TAB.repeat(depth) + part + '\n';
      } else if (part.startsWith('</')) {
        // Closing tag - unindent first
        depth = Math.max(0, depth - 1);
        result += TAB.repeat(depth) + part + '\n';
      } else if (part.startsWith('<')) {
        // Opening or self-closing tag
        const isSelfClosing = part.endsWith('/>');
        const tagName = part.match(/<(\w+)/)?.[1];

        // Check if next part is simple text content
        const nextPart = parts[i + 1];
        const hasSimpleContent = nextPart && !nextPart.startsWith('<') && nextPart.trim().length > 0 && nextPart.trim().length <= 100;

        if (hasSimpleContent && parts[i + 2] && parts[i + 2] === `</${tagName}>`) {
          // Simple tag with inline content: <tag>content</tag>
          result += TAB.repeat(depth) + part + nextPart.trim() + parts[i + 2] + '\n';
          i += 2; // Skip content and closing tag
        } else {
          // Multi-line tag
          result += TAB.repeat(depth) + part + '\n';
          if (!isSelfClosing) {
            depth++;
          }
        }
      } else {
        // Text content between tags
        const trimmed = part.trim();
        if (trimmed) {
          result += TAB.repeat(depth) + trimmed + '\n';
        }
      }
    }

    return result;
  }

  /**
   * Display summary statistics
   */
  displaySummary() {
    console.log(chalk.cyan.bold('\n═══════════════════════════════════════════════'));
    console.log(chalk.cyan.bold('                 SUMMARY'));
    console.log(chalk.cyan.bold('═══════════════════════════════════════════════\n'));

    console.log(chalk.bold('Bundle Statistics:'));
    console.log(`  Total agents found:    ${this.stats.totalAgents}`);
    console.log(`  Successfully bundled:  ${chalk.green(this.stats.bundledAgents)}`);
    if (this.stats.skippedAgents > 0) {
      console.log(`  Skipped (webskip/bundle): ${chalk.gray(this.stats.skippedAgents)}`);
    }

    if (this.stats.failedAgents > 0) {
      console.log(`  Failed to bundle:      ${chalk.red(this.stats.failedAgents)}`);
    }

    if (this.stats.invalidXml > 0) {
      console.log(`  Invalid XML bundles:   ${chalk.yellow(this.stats.invalidXml)}`);
    }

    // Display warnings summary
    // Check if there are actually any warnings with content
    const hasActualWarnings = this.stats.warnings.some((w) => w && w.warnings && w.warnings.length > 0);

    if (hasActualWarnings) {
      console.log(chalk.yellow('\n⚠ Missing Dependencies by Agent:'));

      // Group and display warnings by agent
      for (const agentWarning of this.stats.warnings) {
        if (agentWarning && agentWarning.warnings && agentWarning.warnings.length > 0) {
          console.log(chalk.bold(`\n  ${agentWarning.agent}:`));
          // Display unique warnings for this agent
          const uniqueWarnings = [...new Set(agentWarning.warnings)];
          for (const warning of uniqueWarnings) {
            console.log(chalk.dim(`    • ${warning}`));
          }
        }
      }
    } else {
      console.log(chalk.green('\n✓ No missing dependencies'));
    }

    // Final status
    if (this.stats.invalidXml > 0) {
      console.log(chalk.yellow('\n⚠ Some bundles have invalid XML. Please review the output.'));
    } else if (this.stats.failedAgents > 0) {
      console.log(chalk.yellow('\n⚠ Some agents failed to bundle. Please review the errors.'));
    } else {
      console.log(chalk.green('\n✨ All bundles generated successfully!'));
    }

    console.log(chalk.cyan.bold('\n═══════════════════════════════════════════════\n'));
  }
}

module.exports = { WebBundler };