Merge 0db123dd0b into 2d134314c9

* feat(cli): add uninstall command with selective component removal

Add `bmad uninstall` CLI command for clean removal of BMAD installations.
Interactive mode with directory router and component multiselect; non-interactive
`--yes` flag preserves user artifacts by default. Three-phase spinner UX,
manifest-scoped IDE cleanup, GitHub Copilot marker stripping, recursive empty
directory cleanup, and chalk-to-clack migration in copilot handler.

Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>

* fix(cli): address code review findings for uninstall command

- Add path traversal guard in uninstallOutputFolder (resolve + startsWith)
- Thread silent flag through to cleanupCopilotInstructions
- Trim text input before path.resolve in directory prompt
- DRY uninstall() by delegating to extracted helper methods
- Validate projectDir existence before probing for BMAD
- Use fs.rmdir instead of fs.remove in removeEmptyParents (race safety)

Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>

* feat(cli): add destructive action warning and confirm before uninstall

Move warning box after component selection and add a confirmation prompt
defaulting to No, so users see the irreversibility warning right before
the point of no return. Non-interactive --yes mode skips both.

Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>

---------

Co-authored-by: Claude Opus 4.6 <noreply@anthropic.com>
Co-authored-by: Brian <bmadcode@gmail.com>

package.json

@@ -25,6 +25,7 @@
   },
   "scripts": {
     "bmad:install": "node tools/cli/bmad-cli.js install",
+    "bmad:uninstall": "node tools/cli/bmad-cli.js uninstall",
     "docs:build": "node tools/build-docs.mjs",
     "docs:dev": "astro dev --root website",
     "docs:fix-links": "node tools/fix-doc-links.js",

src/bmm/workflows/4-implementation/create-story/checklist.md

@@ -35,7 +35,7 @@ This is a COMPETITION to create the **ULTIMATE story context** that makes LLM de
 
 - The `{project-root}/_bmad/core/tasks/validate-workflow.xml` framework will automatically:
   - Load this checklist file
-  - Load the newly created story file (`{story_file_path}`)
+  - Load the story file (`{story_file}` when provided, otherwise `{default_output_file}`)
   - Load workflow variables from `{installed_path}/workflow.yaml`
   - Execute the validation process
 
@@ -51,7 +51,7 @@ This is a COMPETITION to create the **ULTIMATE story context** that makes LLM de
 - **Story file**: The story file to review and improve
 - **Workflow variables**: From workflow.yaml (implementation_artifacts, epics_file, etc.)
 - **Source documents**: Epics, architecture, etc. (discovered or provided)
-- **Validation framework**: `validate-workflow.xml` (handles checklist execution)
+- **Validation framework**: `validate-workflow.xml` (handles checklist execution and report generation)
 
 ---
 
@@ -62,10 +62,20 @@ You will systematically re-do the entire story creation process, but with a crit
 ### **Step 1: Load and Understand the Target**
 
 1. **Load the workflow configuration**: `{installed_path}/workflow.yaml` for variable inclusion
-2. **Load the story file**: `{story_file_path}` (provided by user or discovered)
+2. **Load the story file**: `{story_file}` first, fallback to `{default_output_file}` (or explicit `{document}` input)
 3. **Load validation framework**: `{project-root}/_bmad/core/tasks/validate-workflow.xml`
-4. **Extract metadata**: epic_num, story_num, story_key, story_title from story file
+4. **Resolve variables deterministically**:
-5. **Resolve all workflow variables**: implementation_artifacts, epics_file, architecture_file, etc.
+   - Load config_source file if present
+   - Parse workflow.yaml key/value pairs
+   - For any value matching `{config_source}:key`, resolve from the loaded config source
+   - Resolve system path variables (for example `{project-root}`, `{installed_path}`) in every path value
+   - Resolve system-generated values (for example `{date}`) using current execution context
+   - Required for this checklist flow: `{epics_file}`, `{architecture_file}`, `{implementation_artifacts}`, `{project-root}`, `{installed_path}`, and at least one story locator (`{story_file}` or `{default_output_file}`)
+   - Optional/fallback-capable values: validation `{checklist}` input and validation `{report}` input
+   - Validation task input contract: `workflow` is required; `checklist`, `document`, and `report` are optional with deterministic fallback
+   - Note: create-story invoke-task passes `document={default_output_file}` explicitly, which overrides fallback discovery
+   - If any required value remains unresolved, stop and request explicit user input before continuing
+5. **Extract metadata**: epic_num, story_num, story_key, story_title from story file
 6. **Understand current status**: What story implementation guidance is currently provided?
 
 **Note:** If running in fresh context, user should provide the story file path being reviewed. If running from create-story workflow, the validation framework will automatically discover the checklist and story file.

src/bmm/workflows/4-implementation/create-story/instructions.xml

@@ -280,21 +280,16 @@
     <template-output file="{default_output_file}">testing_requirements</template-output>
 
     <!-- Previous story intelligence -->
-    <check
+    <action>If previous story learnings are unavailable (for example this is story 1 in epic), set previous_story_intelligence to the canonical format: N/A: {one-line reason}</action>
-      if="previous story learnings available">
+    <template-output file="{default_output_file}">previous_story_intelligence</template-output>
-      <template-output file="{default_output_file}">previous_story_intelligence</template-output>
-    </check>
 
     <!-- Git intelligence -->
-    <check
+    <action>If git analysis is unavailable or not relevant, set git_intelligence_summary to the canonical format: N/A: {one-line reason}</action>
-      if="git analysis completed">
+    <template-output file="{default_output_file}">git_intelligence_summary</template-output>
-      <template-output file="{default_output_file}">git_intelligence_summary</template-output>
-    </check>
 
     <!-- Latest technical specifics -->
-    <check if="web research completed">
+    <action>If web research was not completed or not needed, set latest_tech_information to the canonical format: N/A: {one-line reason}</action>
-      <template-output file="{default_output_file}">latest_tech_information</template-output>
+    <template-output file="{default_output_file}">latest_tech_information</template-output>
-    </check>
 
     <!-- Project context reference -->
     <template-output
@@ -311,8 +306,8 @@
   </step>
 
   <step n="6" goal="Update sprint status and finalize">
-    <invoke-task>Validate against checklist at {installed_path}/checklist.md using _bmad/core/tasks/validate-workflow.xml</invoke-task>
     <action>Save story document unconditionally</action>
+    <invoke-task>Run {project-root}/_bmad/core/tasks/validate-workflow.xml with workflow={installed_path}/workflow.yaml checklist={installed_path}/checklist.md document={default_output_file}</invoke-task>
 
     <!-- Update sprint status -->
     <check if="sprint status file exists">

src/core/tasks/validate-workflow.xml

@@ -0,0 +1,179 @@
+<task id="_bmad/core/tasks/validate-workflow.xml"
+  name="Validate Workflow Output"
+  description="Run a workflow checklist against a target document and produce an evidence-backed validation report">
+
+  <objective>Validate a generated document against checklist requirements with deterministic variable resolution and produce an actionable pass/fail report</objective>
+
+  <inputs>
+    <input name="workflow" required="true" desc="Workflow yaml path used to resolve variables and checklist location" />
+    <input name="checklist" required="false" desc="Checklist file path. Defaults to workflow.yaml validation field, then checklist.md beside workflow" />
+    <input name="document" required="false" desc="Document to validate. If omitted, resolve from workflow variables only" />
+    <input name="report" required="false" desc="Output report file path. Defaults to document folder validation-report-{timestamp_utc}.md" />
+  </inputs>
+
+  <llm critical="true">
+    <i>MANDATORY: Execute ALL steps in order. Do not skip any checklist item.</i>
+    <i>Always read COMPLETE files; do not sample with offsets.</i>
+    <i>If a file cannot be loaded in one read, read it in deterministic sequential chunks until full coverage is achieved and recorded.</i>
+    <i>Every non-N/A judgment must include concrete evidence from the document.</i>
+    <i>If a required path cannot be resolved, stop and ask for explicit user input.</i>
+    <i>Be strict and objective: no assumptions without evidence.</i>
+    <i>N/A is allowed only when an explicit conditional requirement is not applicable; never use N/A due to missing evidence.</i>
+  </llm>
+
+  <flow>
+    <step n="1" title="Load Workflow Context">
+      <action>Load workflow yaml from input {workflow}</action>
+      <action>Resolve variables in this order:
+        1) load config_source file if present
+        2) resolve all {config_source}:key references
+        3) resolve system path variables ({project-root}, {installed_path})
+        4) resolve system-generated values (date)
+      </action>
+      <action>Determine checklist path in priority order:
+        - explicit input {checklist}
+        - workflow.yaml field "validation"
+        - sibling file checklist.md in workflow directory
+      </action>
+      <action>Determine document path in priority order:
+        - explicit input {document}
+        - resolved variable {story_file} if present
+        - resolved variable {default_output_file} if present
+      </action>
+      <action if="still unresolved">Ask user: "Which document should I validate?" and WAIT</action>
+      <action>Normalize resolved workflow/checklist/document paths to absolute paths before loading files</action>
+    </step>
+
+    <step n="2" title="Load Checklist and Target Document" critical="true">
+      <action>Load full checklist content (use chunked sequential reads only when needed for large files, and record covered ranges)</action>
+      <action>Load full target document content (use chunked sequential reads only when needed for large files, and record covered ranges)</action>
+      <action>Extract story metadata when available (epic_num, story_num, story_id, story_key, title) from filename, heading, or frontmatter</action>
+      <action>Parse checklist into ordered sections and atomic validation items; assign each item a stable id (section_index.item_index)</action>
+      <action>Compute parsed_item_count and expected_item_count (from raw checklist requirement markers such as - [ ], - [x], and requirement list lines)</action>
+      <action if="expected_item_count &gt; 0 AND parsed_item_count &lt; expected_item_count * 0.9">HALT with error: "Checklist parse divergence too large (parsed={parsed_item_count}, expected~={expected_item_count}); fix checklist formatting before validation"</action>
+      <action>Determine critical checks from explicit signals only:
+        - item-level markers: [CRITICAL], critical:true, MUST FIX
+        - section-level markers: headings containing CRITICAL (case-insensitive), MUST FIX, MUST-FIX, or the exact phrase "Must Fix Before Proceeding"
+        - XML section attributes: critical="true" or critical="yes"
+        - do not infer criticality from generic keywords alone
+      </action>
+      <action>Detect conditional expressions in checklist items (for example: if/when/unless + variable references)</action>
+      <action if="no checklist items parsed">HALT with error: "Checklist is empty or unparsable"</action>
+      <action if="conditional items reference metadata and metadata is missing">Ask user to provide all missing referenced metadata fields (epic_num, story_num, story_id, story_key, title/story_title) and WAIT before evaluating checklist items</action>
+    </step>
+
+    <step n="3" title="Validate Every Checklist Item" critical="true">
+      <mandate>For every checklist item, evaluate one of: PASS, PARTIAL, FAIL, N/A</mandate>
+      <action>Initialize counters to zero before evaluation:
+        - pass_count, partial_count, fail_count, na_count
+        - critical_fail_count, critical_partial_count
+        - applicable_count, total_item_count, processed_item_count
+        - total_section_count, processed_section_count
+      </action>
+      <action>For each item:
+        - restate requirement in one short sentence
+        - if item contains explicit condition (for example "If story_num > 1") and condition is false, mark N/A with the exact reason
+        - locate explicit evidence in document (include line references when possible)
+        - consider implied coverage only when explicit text is absent
+        - assign verdict and rationale
+        - if PARTIAL/FAIL, describe impact and a concrete fix
+        - update all counters immediately after each verdict
+      </action>
+      <action>Process sections in deterministic order and increment processed_section_count after each section completes</action>
+      <action if="processed_section_count != total_section_count">HALT with error: "Validation incomplete: one or more checklist sections were not processed"</action>
+      <action if="processed_item_count != total_item_count">HALT with error: "Validation incomplete: one or more checklist items were not processed"</action>
+      <action>Compute applicable_count = pass_count + partial_count + fail_count</action>
+      <action>Compute pass_percent using applicable_count (if 0, set pass_percent=0)</action>
+      <action>Set gate_warning:
+        - "No applicable checklist items were evaluated; manual confirmation required" if applicable_count == 0
+        - "N/A" otherwise
+      </action>
+      <action>Set gate decision deterministically:
+        - NEEDS_REVIEW if applicable_count == 0
+        - FAIL if critical_fail_count &gt; 0
+        - FAIL if critical_partial_count &gt; 0
+        - FAIL if fail_count &gt; 0
+        - PASS otherwise
+      </action>
+      <critical>DO NOT SKIP ANY ITEM OR SECTION</critical>
+    </step>
+
+    <step n="4" title="Generate Validation Report">
+      <action>Generate timestamp values:
+        - timestamp_utc for filenames in YYYYMMDD-HHmmss (UTC)
+        - generated_at_utc for report display in ISO-8601 UTC
+      </action>
+      <action>Set report path:
+        - use explicit input {report} when provided
+        - else save to target document folder as validation-report-{timestamp_utc}.md
+      </action>
+      <action>Write report with the format below</action>
+      <action if="report write/save fails">HALT with error: "Validation report could not be saved"</action>
+
+      <report-format>
+        # Validation Report
+
+        - Document: {document}
+        - Checklist: {checklist}
+        - Workflow: {workflow}
+        - Date: {generated_at_utc}
+
+        ## Summary
+        - Overall pass rate: {pass_count}/{applicable_count} ({pass_percent}%)
+        - Critical failures: {critical_fail_count}
+        - Critical partials: {critical_partial_count}
+        - Gate decision: {PASS|FAIL|NEEDS_REVIEW}
+        - Gate warning: {gate_warning}
+
+        ## Section Results
+        ### {Section Name}
+        - PASS: {count}
+        - PARTIAL: {count}
+        - FAIL: {count}
+        - N/A: {count}
+
+        For each checklist item:
+        - [MARK] {item}
+          - Evidence: {quote or line reference}
+          - Analysis: {why mark is correct}
+          - Action (if PARTIAL/FAIL): {specific remediation}
+
+        ## Must Fix Before Proceeding
+        - {all critical FAIL and critical PARTIAL items}
+
+        ## Should Improve
+        - {all non-critical FAIL and non-critical PARTIAL items}
+
+        ## Final Recommendation
+        1. {highest-priority fix}
+        2. {second-priority fix}
+        3. {third-priority fix}
+      </report-format>
+    </step>
+
+    <step n="5" title="Return Decision and Halt">
+      <action>Present concise summary with counts and gate decision</action>
+      <action>Provide report path</action>
+      <action if="critical failures exist">State clearly that workflow should not proceed until fixes are applied</action>
+      <action if="gate decision == PASS">Return control immediately and continue calling workflow execution</action>
+      <action if="gate decision == FAIL OR gate decision == NEEDS_REVIEW">HALT and wait for user direction</action>
+    </step>
+  </flow>
+
+  <halt-conditions>
+    <condition>HALT if workflow file cannot be loaded</condition>
+    <condition>HALT if checklist file cannot be loaded</condition>
+    <condition>HALT if target document cannot be determined after user prompt</condition>
+    <condition>HALT if any checklist section is skipped</condition>
+    <condition>HALT if validation report cannot be saved</condition>
+  </halt-conditions>
+
+  <critical-rules>
+    <rule>Never skip checklist items</rule>
+    <rule>Every PASS/PARTIAL/FAIL must have evidence</rule>
+    <rule>Use deterministic variable resolution before asking the user</rule>
+    <rule>Always save a validation report file</rule>
+    <rule>N/A is valid only for explicit conditional non-applicability</rule>
+    <rule>Criticality must come from explicit checklist markers or critical sections</rule>
+  </critical-rules>
+</task>

tools/cli/commands/uninstall.js

@@ -0,0 +1,167 @@
+const path = require('node:path');
+const fs = require('fs-extra');
+const prompts = require('../lib/prompts');
+const { Installer } = require('../installers/lib/core/installer');
+
+const installer = new Installer();
+
+module.exports = {
+  command: 'uninstall',
+  description: 'Remove BMAD installation from the current project',
+  options: [
+    ['-y, --yes', 'Remove all BMAD components without prompting (preserves user artifacts)'],
+    ['--directory <path>', 'Project directory (default: current directory)'],
+  ],
+  action: async (options) => {
+    try {
+      let projectDir;
+
+      if (options.directory) {
+        // Explicit --directory flag takes precedence
+        projectDir = path.resolve(options.directory);
+      } else if (options.yes) {
+        // Non-interactive mode: use current directory
+        projectDir = process.cwd();
+      } else {
+        // Interactive: ask user which directory to uninstall from
+        // select() handles cancellation internally (exits process)
+        const dirChoice = await prompts.select({
+          message: 'Where do you want to uninstall BMAD from?',
+          choices: [
+            { value: 'cwd', name: `Current directory (${process.cwd()})` },
+            { value: 'other', name: 'Another directory...' },
+          ],
+        });
+
+        if (dirChoice === 'other') {
+          // text() handles cancellation internally (exits process)
+          const customDir = await prompts.text({
+            message: 'Enter the project directory path:',
+            placeholder: process.cwd(),
+            validate: (value) => {
+              if (!value || value.trim().length === 0) return 'Directory path is required';
+            },
+          });
+
+          projectDir = path.resolve(customDir.trim());
+        } else {
+          projectDir = process.cwd();
+        }
+      }
+
+      if (!(await fs.pathExists(projectDir))) {
+        await prompts.log.error(`Directory does not exist: ${projectDir}`);
+        process.exit(1);
+      }
+
+      const { bmadDir } = await installer.findBmadDir(projectDir);
+
+      if (!(await fs.pathExists(bmadDir))) {
+        await prompts.log.warn('No BMAD installation found.');
+        process.exit(0);
+      }
+
+      const existingInstall = await installer.getStatus(projectDir);
+      const version = existingInstall.version || 'unknown';
+      const modules = (existingInstall.modules || []).map((m) => m.id || m.name).join(', ');
+      const ides = (existingInstall.ides || []).join(', ');
+
+      const outputFolder = await installer.getOutputFolder(projectDir);
+
+      await prompts.intro('BMAD Uninstall');
+      await prompts.note(`Version: ${version}\nModules: ${modules}\nIDE integrations: ${ides}`, 'Current Installation');
+
+      let removeModules = true;
+      let removeIdeConfigs = true;
+      let removeOutputFolder = false;
+
+      if (!options.yes) {
+        // multiselect() handles cancellation internally (exits process)
+        const selected = await prompts.multiselect({
+          message: 'Select components to remove:',
+          options: [
+            {
+              value: 'modules',
+              label: `BMAD Modules & data (${installer.bmadFolderName}/)`,
+              hint: 'Core installation, agents, workflows, config',
+            },
+            { value: 'ide', label: 'IDE integrations', hint: ides || 'No IDEs configured' },
+            { value: 'output', label: `User artifacts (${outputFolder}/)`, hint: 'WARNING: Contains your work products' },
+          ],
+          initialValues: ['modules', 'ide'],
+          required: true,
+        });
+
+        removeModules = selected.includes('modules');
+        removeIdeConfigs = selected.includes('ide');
+        removeOutputFolder = selected.includes('output');
+
+        const red = (s) => `\u001B[31m${s}\u001B[0m`;
+        await prompts.note(
+          red('💀 This action is IRREVERSIBLE! Removed files cannot be recovered!') +
+            '\n' +
+            red('💀 IDE configurations and modules will need to be reinstalled.') +
+            '\n' +
+            red('💀 User artifacts are preserved unless explicitly selected.'),
+          '!! DESTRUCTIVE ACTION !!',
+        );
+
+        const confirmed = await prompts.confirm({
+          message: 'Proceed with uninstall?',
+          default: false,
+        });
+
+        if (!confirmed) {
+          await prompts.outro('Uninstall cancelled.');
+          process.exit(0);
+        }
+      }
+
+      // Phase 1: IDE integrations
+      if (removeIdeConfigs) {
+        const s = await prompts.spinner();
+        s.start('Removing IDE integrations...');
+        await installer.uninstallIdeConfigs(projectDir, existingInstall, { silent: true });
+        s.stop(`Removed IDE integrations (${ides || 'none'})`);
+      }
+
+      // Phase 2: User artifacts
+      if (removeOutputFolder) {
+        const s = await prompts.spinner();
+        s.start(`Removing user artifacts (${outputFolder}/)...`);
+        await installer.uninstallOutputFolder(projectDir, outputFolder);
+        s.stop('User artifacts removed');
+      }
+
+      // Phase 3: BMAD modules & data (last — other phases may need _bmad/)
+      if (removeModules) {
+        const s = await prompts.spinner();
+        s.start(`Removing BMAD modules & data (${installer.bmadFolderName}/)...`);
+        await installer.uninstallModules(projectDir);
+        s.stop('Modules & data removed');
+      }
+
+      const summary = [];
+      if (removeIdeConfigs) summary.push('IDE integrations cleaned');
+      if (removeModules) summary.push('Modules & data removed');
+      if (removeOutputFolder) summary.push('User artifacts removed');
+      if (!removeOutputFolder) summary.push(`User artifacts preserved in ${outputFolder}/`);
+
+      await prompts.note(summary.join('\n'), 'Summary');
+      await prompts.outro('To reinstall, run: npx bmad-method install');
+
+      process.exit(0);
+    } catch (error) {
+      try {
+        const errorMessage = error instanceof Error ? error.message : String(error);
+        await prompts.log.error(`Uninstall failed: ${errorMessage}`);
+        if (error instanceof Error && error.stack) {
+          await prompts.log.message(error.stack);
+        }
+      } catch {
+        console.error(error instanceof Error ? error.message : error);
+      }
+      process.exit(1);
+    }
+  },
+};

tools/cli/installers/install-messages.yaml

@@ -34,7 +34,7 @@ startMessage: |
     - Subscribe on YouTube: https://www.youtube.com/@BMadCode
     - Every star & sub helps us reach more developers!
 
-  Latest updates: https://github.com/bmad-code-org/BMAD-METHOD/CHANGELOG.md
+  Latest updates: https://github.com/bmad-code-org/BMAD-METHOD/blob/main/CHANGELOG.md
 
   ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━
 

tools/cli/installers/lib/core/installer.js

@@ -1528,20 +1528,157 @@ class Installer {
   }
 
   /**
-   * Uninstall BMAD
+   * Uninstall BMAD with selective removal options
+   * @param {string} directory - Project directory
+   * @param {Object} options - Uninstall options
+   * @param {boolean} [options.removeModules=true] - Remove _bmad/ directory
+   * @param {boolean} [options.removeIdeConfigs=true] - Remove IDE configurations
+   * @param {boolean} [options.removeOutputFolder=false] - Remove user artifacts output folder
+   * @returns {Object} Result with success status and removed components
    */
-  async uninstall(directory) {
+  async uninstall(directory, options = {}) {
     const projectDir = path.resolve(directory);
     const { bmadDir } = await this.findBmadDir(projectDir);
 
-    if (await fs.pathExists(bmadDir)) {
+    if (!(await fs.pathExists(bmadDir))) {
-      await fs.remove(bmadDir);
+      return { success: false, reason: 'not-installed' };
     }
 
-    // Clean up IDE configurations
+    // 1. DETECT: Read state BEFORE deleting anything
-    await this.ideManager.cleanup(projectDir);
+    const existingInstall = await this.detector.detect(bmadDir);
+    const outputFolder = await this._readOutputFolder(bmadDir);
 
-    return { success: true };
+    const removed = { modules: false, ideConfigs: false, outputFolder: false };
+
+    // 2. IDE CLEANUP (before _bmad/ deletion so configs are accessible)
+    if (options.removeIdeConfigs !== false) {
+      await this.uninstallIdeConfigs(projectDir, existingInstall, { silent: options.silent });
+      removed.ideConfigs = true;
+    }
+
+    // 3. OUTPUT FOLDER (only if explicitly requested)
+    if (options.removeOutputFolder === true && outputFolder) {
+      removed.outputFolder = await this.uninstallOutputFolder(projectDir, outputFolder);
+    }
+
+    // 4. BMAD DIRECTORY (last, after everything that needs it)
+    if (options.removeModules !== false) {
+      removed.modules = await this.uninstallModules(projectDir);
+    }
+
+    return { success: true, removed, version: existingInstall.version };
+  }
+
+  /**
+   * Uninstall IDE configurations only
+   * @param {string} projectDir - Project directory
+   * @param {Object} existingInstall - Detection result from detector.detect()
+   * @param {Object} [options] - Options (e.g. { silent: true })
+   * @returns {Promise<Object>} Results from IDE cleanup
+   */
+  async uninstallIdeConfigs(projectDir, existingInstall, options = {}) {
+    await this.ideManager.ensureInitialized();
+    const cleanupOptions = { isUninstall: true, silent: options.silent };
+    const ideList = existingInstall.ides || [];
+    if (ideList.length > 0) {
+      return this.ideManager.cleanupByList(projectDir, ideList, cleanupOptions);
+    }
+    return this.ideManager.cleanup(projectDir, cleanupOptions);
+  }
+
+  /**
+   * Remove user artifacts output folder
+   * @param {string} projectDir - Project directory
+   * @param {string} outputFolder - Output folder name (relative)
+   * @returns {Promise<boolean>} Whether the folder was removed
+   */
+  async uninstallOutputFolder(projectDir, outputFolder) {
+    if (!outputFolder) return false;
+    const resolvedProject = path.resolve(projectDir);
+    const outputPath = path.resolve(resolvedProject, outputFolder);
+    if (!outputPath.startsWith(resolvedProject + path.sep)) {
+      return false;
+    }
+    if (await fs.pathExists(outputPath)) {
+      await fs.remove(outputPath);
+      return true;
+    }
+    return false;
+  }
+
+  /**
+   * Remove the _bmad/ directory
+   * @param {string} projectDir - Project directory
+   * @returns {Promise<boolean>} Whether the directory was removed
+   */
+  async uninstallModules(projectDir) {
+    const { bmadDir } = await this.findBmadDir(projectDir);
+    if (await fs.pathExists(bmadDir)) {
+      await fs.remove(bmadDir);
+      return true;
+    }
+    return false;
+  }
+
+  /**
+   * Get the configured output folder name for a project
+   * Resolves bmadDir internally from projectDir
+   * @param {string} projectDir - Project directory
+   * @returns {string} Output folder name (relative, default: '_bmad-output')
+   */
+  async getOutputFolder(projectDir) {
+    const { bmadDir } = await this.findBmadDir(projectDir);
+    return this._readOutputFolder(bmadDir);
+  }
+
+  /**
+   * Read the output_folder setting from module config files
+   * Checks bmm/config.yaml first, then other module configs
+   * @param {string} bmadDir - BMAD installation directory
+   * @returns {string} Output folder path or default
+   */
+  async _readOutputFolder(bmadDir) {
+    const yaml = require('yaml');
+
+    // Check bmm/config.yaml first (most common)
+    const bmmConfigPath = path.join(bmadDir, 'bmm', 'config.yaml');
+    if (await fs.pathExists(bmmConfigPath)) {
+      try {
+        const content = await fs.readFile(bmmConfigPath, 'utf8');
+        const config = yaml.parse(content);
+        if (config && config.output_folder) {
+          // Strip {project-root}/ prefix if present
+          return config.output_folder.replace(/^\{project-root\}[/\\]/, '');
+        }
+      } catch {
+        // Fall through to other modules
+      }
+    }
+
+    // Scan other module config.yaml files
+    try {
+      const entries = await fs.readdir(bmadDir, { withFileTypes: true });
+      for (const entry of entries) {
+        if (!entry.isDirectory() || entry.name === 'bmm' || entry.name.startsWith('_')) continue;
+        const configPath = path.join(bmadDir, entry.name, 'config.yaml');
+        if (await fs.pathExists(configPath)) {
+          try {
+            const content = await fs.readFile(configPath, 'utf8');
+            const config = yaml.parse(content);
+            if (config && config.output_folder) {
+              return config.output_folder.replace(/^\{project-root\}[/\\]/, '');
+            }
+          } catch {
+            // Continue scanning
+          }
+        }
+      }
+    } catch {
+      // Directory scan failed
+    }
+
+    // Default fallback
+    return '_bmad-output';
   }
 
   /**

tools/cli/installers/lib/ide/_config-driven.js

@@ -456,8 +456,18 @@ LOAD and execute from: {project-root}/{{bmadFolderName}}/{{path}}
   async cleanup(projectDir, options = {}) {
     // Clean all target directories
     if (this.installerConfig?.targets) {
+      const parentDirs = new Set();
       for (const target of this.installerConfig.targets) {
         await this.cleanupTarget(projectDir, target.target_dir, options);
+        // Track parent directories for empty-dir cleanup
+        const parentDir = path.dirname(target.target_dir);
+        if (parentDir && parentDir !== '.') {
+          parentDirs.add(parentDir);
+        }
+      }
+      // After all targets cleaned, remove empty parent directories (recursive up to projectDir)
+      for (const parentDir of parentDirs) {
+        await this.removeEmptyParents(projectDir, parentDir);
       }
     } else if (this.installerConfig?.target_dir) {
       await this.cleanupTarget(projectDir, this.installerConfig.target_dir, options);
@@ -509,6 +519,41 @@ LOAD and execute from: {project-root}/{{bmadFolderName}}/{{path}}
     if (removedCount > 0 && !options.silent) {
       await prompts.log.message(`  Cleaned ${removedCount} BMAD files from ${targetDir}`);
     }
+
+    // Remove empty directory after cleanup
+    if (removedCount > 0) {
+      try {
+        const remaining = await fs.readdir(targetPath);
+        if (remaining.length === 0) {
+          await fs.remove(targetPath);
+        }
+      } catch {
+        // Directory may already be gone or in use — skip
+      }
+    }
+  }
+  /**
+   * Recursively remove empty directories walking up from dir toward projectDir
+   * Stops at projectDir boundary — never removes projectDir itself
+   * @param {string} projectDir - Project root (boundary)
+   * @param {string} relativeDir - Relative directory to start from
+   */
+  async removeEmptyParents(projectDir, relativeDir) {
+    let current = relativeDir;
+    let last = null;
+    while (current && current !== '.' && current !== last) {
+      last = current;
+      const fullPath = path.join(projectDir, current);
+      try {
+        if (!(await fs.pathExists(fullPath))) break;
+        const remaining = await fs.readdir(fullPath);
+        if (remaining.length > 0) break;
+        await fs.rmdir(fullPath);
+      } catch {
+        break;
+      }
+      current = path.dirname(current);
+    }
   }
 }
 

tools/cli/installers/lib/ide/github-copilot.js

@@ -1,6 +1,6 @@
 const path = require('node:path');
 const { BaseIdeSetup } = require('./_base-ide');
-const chalk = require('chalk');
+const prompts = require('../../../lib/prompts');
 const { AgentCommandGenerator } = require('./shared/agent-command-generator');
 const { BMAD_FOLDER_NAME, toDashPath } = require('./shared/path-utils');
 const fs = require('fs-extra');
@@ -31,7 +31,7 @@ class GitHubCopilotSetup extends BaseIdeSetup {
    * @param {Object} options - Setup options
    */
   async setup(projectDir, bmadDir, options = {}) {
-    console.log(chalk.cyan(`Setting up ${this.name}...`));
+    if (!options.silent) await prompts.log.info(`Setting up ${this.name}...`);
 
     // Create .github/agents and .github/prompts directories
     const githubDir = path.join(projectDir, this.githubDir);
@@ -66,21 +66,15 @@ class GitHubCopilotSetup extends BaseIdeSetup {
       const targetPath = path.join(agentsDir, fileName);
       await this.writeFile(targetPath, agentContent);
       agentCount++;
-
-      console.log(chalk.green(`  ✓ Created agent: ${fileName}`));
     }
 
     // Generate prompt files from bmad-help.csv
     const promptCount = await this.generatePromptFiles(projectDir, bmadDir, agentArtifacts, agentManifest);
 
     // Generate copilot-instructions.md
-    await this.generateCopilotInstructions(projectDir, bmadDir, agentManifest);
+    await this.generateCopilotInstructions(projectDir, bmadDir, agentManifest, options);
 
-    console.log(chalk.green(`\n✓ ${this.name} configured:`));
+    if (!options.silent) await prompts.log.success(`${this.name} configured: ${agentCount} agents, ${promptCount} prompts → .github/`);
-    console.log(chalk.dim(`  - ${agentCount} agents created in .github/agents/`));
-    console.log(chalk.dim(`  - ${promptCount} prompts created in .github/prompts/`));
-    console.log(chalk.dim(`  - copilot-instructions.md generated`));
-    console.log(chalk.dim(`  - Destination: .github/`));
 
     return {
       success: true,
@@ -406,7 +400,7 @@ tools: ${toolsStr}
    * @param {string} bmadDir - BMAD installation directory
    * @param {Map} agentManifest - Agent manifest data
    */
-  async generateCopilotInstructions(projectDir, bmadDir, agentManifest) {
+  async generateCopilotInstructions(projectDir, bmadDir, agentManifest, options = {}) {
     const configVars = await this.loadModuleConfig(bmadDir);
 
     // Build the agents table from the manifest
@@ -495,19 +489,16 @@ Type \`/bmad-\` in Copilot Chat to see all available BMAD workflows and agent ac
         const after = existing.slice(endIdx + markerEnd.length);
         const merged = `${before}${markedContent}${after}`;
         await this.writeFile(instructionsPath, merged);
-        console.log(chalk.green('  ✓ Updated BMAD section in copilot-instructions.md'));
       } else {
         // Existing file without markers — back it up before overwriting
         const backupPath = `${instructionsPath}.bak`;
         await fs.copy(instructionsPath, backupPath);
-        console.log(chalk.yellow(`  ⚠ Backed up existing copilot-instructions.md → copilot-instructions.md.bak`));
+        if (!options.silent) await prompts.log.warn(`  Backed up copilot-instructions.md → .bak`);
         await this.writeFile(instructionsPath, `${markedContent}\n`);
-        console.log(chalk.green('  ✓ Generated copilot-instructions.md (with BMAD markers)'));
       }
     } else {
       // No existing file — create fresh with markers
       await this.writeFile(instructionsPath, `${markedContent}\n`);
-      console.log(chalk.green('  ✓ Generated copilot-instructions.md'));
     }
   }
 
@@ -607,7 +598,7 @@ Type \`/bmad-\` in Copilot Chat to see all available BMAD workflows and agent ac
   /**
    * Cleanup GitHub Copilot configuration - surgically remove only BMAD files
    */
-  async cleanup(projectDir) {
+  async cleanup(projectDir, options = {}) {
     // Clean up agents directory
     const agentsDir = path.join(projectDir, this.githubDir, this.agentsDir);
     if (await fs.pathExists(agentsDir)) {
@@ -621,8 +612,8 @@ Type \`/bmad-\` in Copilot Chat to see all available BMAD workflows and agent ac
         }
       }
 
-      if (removed > 0) {
+      if (removed > 0 && !options.silent) {
-        console.log(chalk.dim(`  Cleaned up ${removed} existing BMAD agents`));
+        await prompts.log.message(`  Cleaned up ${removed} existing BMAD agents`);
       }
     }
 
@@ -639,16 +630,70 @@ Type \`/bmad-\` in Copilot Chat to see all available BMAD workflows and agent ac
         }
       }
 
-      if (removed > 0) {
+      if (removed > 0 && !options.silent) {
-        console.log(chalk.dim(`  Cleaned up ${removed} existing BMAD prompts`));
+        await prompts.log.message(`  Cleaned up ${removed} existing BMAD prompts`);
       }
     }
 
-    // Note: copilot-instructions.md is NOT cleaned up here.
+    // During uninstall, also strip BMAD markers from copilot-instructions.md.
-    // generateCopilotInstructions() handles marker-based replacement in a single
+    // During reinstall (default), this is skipped because generateCopilotInstructions()
-    // read-modify-write pass, which correctly preserves user content outside the markers.
+    // handles marker-based replacement in a single read-modify-write pass,
-    // Stripping markers here would cause generation to treat the file as legacy (no markers)
+    // which correctly preserves user content outside the markers.
-    // and overwrite user content.
+    if (options.isUninstall) {
+      await this.cleanupCopilotInstructions(projectDir, options);
+    }
+  }
+
+  /**
+   * Strip BMAD marker section from copilot-instructions.md
+   * If file becomes empty after stripping, delete it.
+   * If a .bak backup exists and the main file was deleted, restore the backup.
+   * @param {string} projectDir - Project directory
+   * @param {Object} [options] - Options (e.g. { silent: true })
+   */
+  async cleanupCopilotInstructions(projectDir, options = {}) {
+    const instructionsPath = path.join(projectDir, this.githubDir, 'copilot-instructions.md');
+    const backupPath = `${instructionsPath}.bak`;
+
+    if (!(await fs.pathExists(instructionsPath))) {
+      return;
+    }
+
+    const content = await fs.readFile(instructionsPath, 'utf8');
+    const markerStart = '<!-- BMAD:START -->';
+    const markerEnd = '<!-- BMAD:END -->';
+    const startIdx = content.indexOf(markerStart);
+    const endIdx = content.indexOf(markerEnd);
+
+    if (startIdx === -1 || endIdx === -1 || endIdx <= startIdx) {
+      return; // No valid markers found
+    }
+
+    // Strip the marker section (including markers)
+    const before = content.slice(0, startIdx);
+    const after = content.slice(endIdx + markerEnd.length);
+    const cleaned = before + after;
+
+    if (cleaned.trim().length === 0) {
+      // File is empty after stripping — delete it
+      await fs.remove(instructionsPath);
+
+      // If backup exists, restore it
+      if (await fs.pathExists(backupPath)) {
+        await fs.rename(backupPath, instructionsPath);
+        if (!options.silent) {
+          await prompts.log.message('  Restored copilot-instructions.md from backup');
+        }
+      }
+    } else {
+      // Write cleaned content back (preserve original whitespace)
+      await fs.writeFile(instructionsPath, cleaned, 'utf8');
+
+      // If backup exists, it's stale now — remove it
+      if (await fs.pathExists(backupPath)) {
+        await fs.remove(backupPath);
+      }
+    }
   }
 }
 

tools/cli/installers/lib/ide/manager.js

@@ -216,13 +216,14 @@ class IdeManager {
   /**
    * Cleanup IDE configurations
    * @param {string} projectDir - Project directory
+   * @param {Object} [options] - Cleanup options passed through to handlers
    */
-  async cleanup(projectDir) {
+  async cleanup(projectDir, options = {}) {
     const results = [];
 
     for (const [name, handler] of this.handlers) {
       try {
-        await handler.cleanup(projectDir);
+        await handler.cleanup(projectDir, options);
         results.push({ ide: name, success: true });
       } catch (error) {
         results.push({ ide: name, success: false, error: error.message });
@@ -232,6 +233,40 @@ class IdeManager {
     return results;
   }
 
+  /**
+   * Cleanup only the IDEs in the provided list
+   * Falls back to cleanup() (all handlers) if ideList is empty or undefined
+   * @param {string} projectDir - Project directory
+   * @param {Array<string>} ideList - List of IDE names to clean up
+   * @param {Object} [options] - Cleanup options passed through to handlers
+   * @returns {Array} Results array
+   */
+  async cleanupByList(projectDir, ideList, options = {}) {
+    if (!ideList || ideList.length === 0) {
+      return this.cleanup(projectDir, options);
+    }
+
+    await this.ensureInitialized();
+    const results = [];
+
+    // Build lowercase lookup for case-insensitive matching
+    const lowercaseHandlers = new Map([...this.handlers.entries()].map(([k, v]) => [k.toLowerCase(), v]));
+
+    for (const ideName of ideList) {
+      const handler = lowercaseHandlers.get(ideName.toLowerCase());
+      if (!handler) continue;
+
+      try {
+        await handler.cleanup(projectDir, options);
+        results.push({ ide: ideName, success: true });
+      } catch (error) {
+        results.push({ ide: ideName, success: false, error: error.message });
+      }
+    }
+
+    return results;
+  }
+
   /**
    * Get list of supported IDEs
    * @returns {Array} List of supported IDE names