- Replace all bash scripting with tool-based instructions (Glob, Grep, Read tools)
- Convert Historical Analysis from bash loops to process-based git investigation
- Update Test Analysis to use Glob/Grep patterns instead of bash commands
- Transform Dependency Analysis to use tool-based component mapping
- Replace Final Context Report bash scripting with structured report generation
- Eliminates multiple approval prompts when dev agent executes *build-context command
- Maintains comprehensive analysis workflow while streamlining execution
- Added develop-story to commands list in dev agent
- Enables systematic workflow execution with automatic progress tracking
- Tasks now properly marked [x] as agent progresses through story implementation