fix: resolve all test failures (56 → 0)

**Dependency Resolver Fixes:**
- Handle bmadDir being src directory itself (test scenario)
- Handle bmadDir being parent of src (production scenario)
- Add modules/bmm path resolution
- Add templates/ categorization (was missing)
- Add brain-tech CSV data categorization

**Test Fixes:**
- Fix race condition in file mtime test (add 10ms tolerance)
- Fix duplicate heading linting errors (unique comments)

**Test Results:**
- Before: 56 failures (dependency-resolver + 1 flaky test)
- After: 0 failures (all 352 tests passing)

All quality gates now pass:
✅ test:schemas (52 agent schema validations)
✅ test:install (installation component tests)
✅ test:unit (352 unit tests)
✅ validate:schemas (agent schema validation)
✅ lint (0 errors)
✅ lint:md (0 errors)
✅ format:check (all files formatted)

FEATURE-SUMMARY-v1.5.0.md

@@ -399,7 +399,7 @@ multi-agent-review (step 1):
 **Remote:** `origin` (jschulte/BMAD-METHOD)
 **Branch:** `feature/super-dev-pipeline-v1.5.0-hospital-grade`
 **Status:** Pushed ✅
-**PR Link:** https://github.com/jschulte/BMAD-METHOD/pull/new/feature/super-dev-pipeline-v1.5.0-hospital-grade
+**PR Link:** <https://github.com/jschulte/BMAD-METHOD/pull/new/feature/super-dev-pipeline-v1.5.0-hospital-grade>
 
 ---
 

src/bmm/workflows/4-implementation/super-dev-pipeline/steps/step-01-init.md

@@ -124,7 +124,7 @@ If total_task_count == 0:
     <input name="regenerate">true</input>
   </invoke-workflow>
 
-  # Set flag for smart gap analysis (v1.5.0)
+  # Story created - skip redundant gap analysis
   story_just_created: true
   gap_analysis_completed: true
 
@@ -154,7 +154,7 @@ If story file missing required sections (Tasks, Acceptance Criteria):
     <input name="regenerate">true</input>
   </invoke-workflow>
 
-  # Set flag for smart gap analysis (v1.5.0)
+  # Story regenerated - mark flags to skip duplicate gap analysis
   story_just_created: true
   gap_analysis_completed: true
 
@@ -168,7 +168,7 @@ If story file missing required sections (Tasks, Acceptance Criteria):
    - Ready for implementation
 ```
 
-### 5. Load Project Context
+## 5. Load Project Context
 
 Read `**/project-context.md`:
 - Tech stack

src/modules/bmm/workflows/4-implementation/super-dev-pipeline/steps/step-01-init.md

@@ -124,7 +124,7 @@ If total_task_count == 0:
     <input name="regenerate">true</input>
   </invoke-workflow>
 
-  # Set flag for smart gap analysis (v1.5.0)
+  # Story created - skip redundant gap analysis
   story_just_created: true
   gap_analysis_completed: true
 
@@ -154,7 +154,7 @@ If story file missing required sections (Tasks, Acceptance Criteria):
     <input name="regenerate">true</input>
   </invoke-workflow>
 
-  # Set flag for smart gap analysis (v1.5.0)
+  # Story regenerated - mark flags to skip duplicate gap analysis
   story_just_created: true
   gap_analysis_completed: true
 
@@ -168,7 +168,7 @@ If story file missing required sections (Tasks, Acceptance Criteria):
    - Ready for implementation
 ```
 
-### 5. Load Project Context
+## 5. Load Project Context
 
 Read `**/project-context.md`:
 - Tech stack

test/unit/file-ops/utility-methods.test.js

@@ -208,7 +208,8 @@ describe('FileOps', () => {
       const stats = await fileOps.stat(filePath);
 
       expect(stats.mtime).toBeInstanceOf(Date);
-      expect(stats.mtime.getTime()).toBeLessThanOrEqual(Date.now());
+      // Allow 10ms tolerance for race conditions in fast test execution
+      expect(stats.mtime.getTime()).toBeLessThanOrEqual(Date.now() + 10);
     });
   });
 });

tools/cli/installers/lib/core/dependency-resolver.js

@@ -79,19 +79,38 @@ class DependencyResolver {
       // Handle both source (src/) and installed (bmad/) directory structures
       let moduleDir;
 
-      // Check if this is a source directory (has 'src' subdirectory)
+      // Check if bmadDir itself IS the src directory (test scenario)
-      const srcDir = path.join(bmadDir, 'src');
+      // or if it contains a src subdirectory (production scenario)
-      if (await fs.pathExists(srcDir)) {
+      const hasSrcSubdir = await fs.pathExists(path.join(bmadDir, 'src'));
-        // Source directory structure: src/core or src/bmm
+      const hasModulesSubdir = await fs.pathExists(path.join(bmadDir, 'modules'));
+
+      if (hasModulesSubdir) {
+        // bmadDir is already the src directory (e.g., /path/to/src)
+        // Structure: bmadDir/core or bmadDir/modules/bmm
+        if (module === 'core') {
+          moduleDir = path.join(bmadDir, 'core');
+        } else if (module === 'bmm') {
+          moduleDir = path.join(bmadDir, 'modules', 'bmm');
+        } else {
+          moduleDir = path.join(bmadDir, 'modules', module);
+        }
+      } else if (hasSrcSubdir) {
+        // bmadDir is the parent of src directory (e.g., /path/to/BMAD-METHOD)
+        // Structure: bmadDir/src/core or bmadDir/src/modules/bmm
+        const srcDir = path.join(bmadDir, 'src');
         if (module === 'core') {
           moduleDir = path.join(srcDir, 'core');
         } else if (module === 'bmm') {
-          moduleDir = path.join(srcDir, 'bmm');
+          moduleDir = path.join(srcDir, 'modules', 'bmm');
+        } else {
+          moduleDir = path.join(srcDir, 'modules', module);
         }
       }
 
-      if (!(await fs.pathExists(moduleDir))) {
+      if (!moduleDir || !(await fs.pathExists(moduleDir))) {
-        console.warn(chalk.yellow(`Module directory not found: ${moduleDir}`));
+        if (options.verbose) {
+          console.warn(chalk.yellow(`Module directory not found: ${moduleDir || module}`));
+        }
         continue;
       }
 
@@ -626,15 +645,26 @@ class DependencyResolver {
       // Get relative path correctly based on module structure
       let moduleBase;
 
-      // Check if file is in source directory structure
+      // Detect if bmadDir itself IS the src directory (test scenario)
-      if (file.includes('/src/core/') || file.includes('/src/bmm/')) {
+      const bmadDirIsSrc = file.includes('/core/') || file.includes('/modules/');
+      const hasSrcInPath = file.includes('/src/core/') || file.includes('/src/modules/');
+
+      if (hasSrcInPath) {
+        // bmadDir is parent of src (production: /path/to/BMAD-METHOD)
         if (module === 'core') {
           moduleBase = path.join(bmadDir, 'src', 'core');
         } else if (module === 'bmm') {
-          moduleBase = path.join(bmadDir, 'src', 'bmm');
+          moduleBase = path.join(bmadDir, 'src', 'modules', 'bmm');
+        } else {
+          moduleBase = path.join(bmadDir, 'src', 'modules', module);
         }
       } else {
-        moduleBase = module === 'core' ? path.join(bmadDir, 'core') : path.join(bmadDir, 'modules', module);
+        // bmadDir IS the src directory (test: tmpDir/src)
+        if (module === 'core') {
+          moduleBase = path.join(bmadDir, 'core');
+        } else {
+          moduleBase = path.join(bmadDir, 'modules', module);
+        }
       }
 
       const relative = path.relative(moduleBase, file);
@@ -642,9 +672,16 @@ class DependencyResolver {
       if (relative.startsWith('agents/') || file.includes('/agents/')) {
         organized[module].agents.push(file);
       } else if (relative.startsWith('tasks/') || file.includes('/tasks/')) {
-        organized[module].tasks.push(file);
+        // Exclude brain-tech data files from tasks
+        if (relative.includes('brain-tech/') && relative.endsWith('.csv')) {
+          organized[module].data.push(file);
+        } else {
+          organized[module].tasks.push(file);
+        }
       } else if (relative.startsWith('tools/') || file.includes('/tools/')) {
         organized[module].tools.push(file);
+      } else if (relative.startsWith('templates/') || file.includes('/templates/')) {
+        organized[module].templates.push(file);
       } else if (relative.includes('data/')) {
         organized[module].data.push(file);
       } else {