diff --git a/package.json b/package.json
index 511f7fae..e8583be3 100644
--- a/package.json
+++ b/package.json
@@ -25,7 +25,6 @@
   },
   "scripts": {
     "bmad:install": "node tools/cli/bmad-cli.js install",
-    "bmad:status": "node tools/cli/bmad-cli.js status",
     "bundle": "node tools/cli/bundlers/bundle-web.js all",
     "flatten": "node tools/flattener/main.js",
     "format:check": "prettier --check \"**/*.{js,cjs,mjs,json,md,yaml}\"",
diff --git a/tools/cli/commands/build.js b/tools/cli/commands/build.js
deleted file mode 100644
index 50c12b83..00000000
--- a/tools/cli/commands/build.js
+++ /dev/null
@@ -1,283 +0,0 @@
-const chalk = require('chalk');
-const path = require('node:path');
-const fs = require('fs-extra');
-const { YamlXmlBuilder } = require('../lib/agent/yaml-xml-builder');
-const { getProjectRoot } = require('../lib/project-root');
-
-const builder = new YamlXmlBuilder();
-
-/**
- * Find .claude directory by searching up from current directory
- */
-async function findClaudeDir(startDir) {
-  let currentDir = startDir;
-  const root = path.parse(currentDir).root;
-
-  while (currentDir !== root) {
-    const claudeDir = path.join(currentDir, '.claude');
-    if (await fs.pathExists(claudeDir)) {
-      return claudeDir;
-    }
-    currentDir = path.dirname(currentDir);
-  }
-
-  return null;
-}
-
-module.exports = {
-  command: 'build [agent]',
-  description: 'Build agent XML files from YAML sources',
-  options: [
-    ['-a, --all', 'Build all agents'],
-    ['-d, --directory <path>', 'Project directory', '.'],
-  ],
-  action: async (agentName, options) => {
-    try {
-      let projectDir = path.resolve(options.directory);
-
-      // Auto-detect .claude directory (search up from current dir)
-      const claudeDir = await findClaudeDir(projectDir);
-      if (!claudeDir) {
-        console.log(chalk.yellow('\n⚠️  No .claude directory found'));
-        console.log(chalk.dim('Run this command from your project directory or'));
-        console.log(chalk.dim('use --directory flag to specify location'));
-        console.log(chalk.dim('\nExample: npx bmad-method build pm --directory /path/to/project'));
-        process.exit(1);
-      }
-
-      // Use the directory containing .claude
-      projectDir = path.dirname(claudeDir);
-      console.log(chalk.dim(`Using project: ${projectDir}\n`));
-
-      console.log(chalk.cyan('🔨 Building Agent Files\n'));
-
-      if (options.all) {
-        // Build all agents
-        await buildAllAgents(projectDir);
-      } else if (agentName) {
-        // Build specific agent
-        await buildAgent(projectDir, agentName);
-      } else {
-        // No agent specified, list available agents
-        console.log(chalk.yellow('No agent specified. Use --all to build all agents or specify an agent name.'));
-        console.log(chalk.dim('\nAvailable agents:'));
-        await listAvailableAgents(projectDir);
-      }
-
-      process.exit(0);
-    } catch (error) {
-      console.error(chalk.red('\nError:'), error.message);
-      if (process.env.DEBUG) {
-        console.error(error.stack);
-      }
-      process.exit(1);
-    }
-  },
-};
-
-/**
- * Build a specific agent
- */
-async function buildAgent(projectDir, agentName) {
-  // First check standalone agents in bmad/agents/{agentname}/
-  const standaloneAgentDir = path.join(projectDir, '_bmad', 'agents', agentName);
-  let standaloneYamlPath = path.join(standaloneAgentDir, `${agentName}.agent.yaml`);
-
-  // If exact match doesn't exist, look for any .agent.yaml file in the directory
-  if (!(await fs.pathExists(standaloneYamlPath)) && (await fs.pathExists(standaloneAgentDir))) {
-    const files = await fs.readdir(standaloneAgentDir);
-    const agentFile = files.find((f) => f.endsWith('.agent.yaml'));
-    if (agentFile) {
-      standaloneYamlPath = path.join(standaloneAgentDir, agentFile);
-    }
-  }
-
-  if (await fs.pathExists(standaloneYamlPath)) {
-    const yamlFileName = path.basename(standaloneYamlPath, '.agent.yaml');
-    const outputPath = path.join(standaloneAgentDir, `${yamlFileName}.md`);
-
-    // Build the standalone agent
-    console.log(chalk.cyan(`  Building standalone agent ${agentName}...`));
-
-    const customizePath = path.join(projectDir, '_bmad', '_config', 'agents', `${agentName}.customize.yaml`);
-    const customizeExists = await fs.pathExists(customizePath);
-
-    await builder.buildAgent(standaloneYamlPath, customizeExists ? customizePath : null, outputPath, { includeMetadata: true });
-
-    console.log(chalk.green(`  ✓ ${agentName} built successfully (standalone)`));
-    return;
-  }
-
-  // Find the agent YAML file in .claude/commands/bmad/
-  const bmadCommandsDir = path.join(projectDir, '.claude', 'commands', '_bmad');
-
-  // Search all module directories for the agent
-  const modules = await fs.readdir(bmadCommandsDir);
-  let found = false;
-
-  for (const module of modules) {
-    const agentYamlPath = path.join(bmadCommandsDir, module, 'agents', `${agentName}.agent.yaml`);
-    const outputPath = path.join(bmadCommandsDir, module, 'agents', `${agentName}.md`);
-
-    if (await fs.pathExists(agentYamlPath)) {
-      found = true;
-
-      // Build the agent
-      console.log(chalk.cyan(`  Building ${agentName}...`));
-
-      const customizePath = path.join(projectDir, '.claude', '_config', 'agents', `${agentName}.customize.yaml`);
-      const customizeExists = await fs.pathExists(customizePath);
-
-      await builder.buildAgent(agentYamlPath, customizeExists ? customizePath : null, outputPath, { includeMetadata: true });
-
-      console.log(chalk.green(`  ✓ ${agentName} built successfully`));
-      return;
-    }
-  }
-
-  if (!found) {
-    console.log(chalk.yellow(`  ⚠️  Agent '${agentName}' not found`));
-    console.log(chalk.dim('     Available agents:'));
-    await listAvailableAgents(projectDir);
-  }
-}
-
-/**
- * Build all agents
- */
-async function buildAllAgents(projectDir) {
-  let builtCount = 0;
-
-  // First, build standalone agents in bmad/agents/
-  const standaloneAgentsDir = path.join(projectDir, '_bmad', 'agents');
-  if (await fs.pathExists(standaloneAgentsDir)) {
-    console.log(chalk.cyan('\nBuilding standalone agents...'));
-    const agentDirs = await fs.readdir(standaloneAgentsDir);
-
-    for (const agentDirName of agentDirs) {
-      const agentDir = path.join(standaloneAgentsDir, agentDirName);
-
-      // Skip if not a directory
-      const stat = await fs.stat(agentDir);
-      if (!stat.isDirectory()) {
-        continue;
-      }
-
-      // Find any .agent.yaml file in the directory
-      const files = await fs.readdir(agentDir);
-      const agentFile = files.find((f) => f.endsWith('.agent.yaml'));
-
-      if (!agentFile) {
-        continue;
-      }
-
-      const agentYamlPath = path.join(agentDir, agentFile);
-      const agentName = path.basename(agentFile, '.agent.yaml');
-      const outputPath = path.join(agentDir, `${agentName}.md`);
-
-      console.log(chalk.cyan(`  Building standalone agent ${agentName}...`));
-
-      const customizePath = path.join(projectDir, '_bmad', '_config', 'agents', `${agentName}.customize.yaml`);
-      const customizeExists = await fs.pathExists(customizePath);
-
-      await builder.buildAgent(agentYamlPath, customizeExists ? customizePath : null, outputPath, { includeMetadata: true });
-
-      console.log(chalk.green(`  ✓ ${agentName} (standalone)`));
-      builtCount++;
-    }
-  }
-
-  // Then, build module agents in .claude/commands/bmad/
-  const bmadCommandsDir = path.join(projectDir, '.claude', 'commands', 'bmad');
-  if (await fs.pathExists(bmadCommandsDir)) {
-    console.log(chalk.cyan('\nBuilding module agents...'));
-    const modules = await fs.readdir(bmadCommandsDir);
-
-    for (const module of modules) {
-      const agentsDir = path.join(bmadCommandsDir, module, 'agents');
-
-      if (!(await fs.pathExists(agentsDir))) {
-        continue;
-      }
-
-      const files = await fs.readdir(agentsDir);
-
-      for (const file of files) {
-        if (!file.endsWith('.agent.yaml')) {
-          continue;
-        }
-
-        const agentName = file.replace('.agent.yaml', '');
-        const agentYamlPath = path.join(agentsDir, file);
-        const outputPath = path.join(agentsDir, `${agentName}.md`);
-
-        console.log(chalk.cyan(`  Building ${agentName}...`));
-
-        const customizePath = path.join(projectDir, '.claude', '_config', 'agents', `${agentName}.customize.yaml`);
-        const customizeExists = await fs.pathExists(customizePath);
-
-        await builder.buildAgent(agentYamlPath, customizeExists ? customizePath : null, outputPath, { includeMetadata: true });
-
-        console.log(chalk.green(`  ✓ ${agentName} (${module})`));
-        builtCount++;
-      }
-    }
-  }
-
-  console.log(chalk.green(`\n✓ Built ${builtCount} agent(s)`));
-}
-
-/**
- * List available agents
- */
-async function listAvailableAgents(projectDir) {
-  // List standalone agents first
-  const standaloneAgentsDir = path.join(projectDir, 'bmad', 'agents');
-  if (await fs.pathExists(standaloneAgentsDir)) {
-    console.log(chalk.dim('     Standalone agents:'));
-    const agentDirs = await fs.readdir(standaloneAgentsDir);
-
-    for (const agentDirName of agentDirs) {
-      const agentDir = path.join(standaloneAgentsDir, agentDirName);
-
-      // Skip if not a directory
-      const stat = await fs.stat(agentDir);
-      if (!stat.isDirectory()) {
-        continue;
-      }
-
-      // Find any .agent.yaml file in the directory
-      const files = await fs.readdir(agentDir);
-      const agentFile = files.find((f) => f.endsWith('.agent.yaml'));
-
-      if (agentFile) {
-        const agentName = path.basename(agentFile, '.agent.yaml');
-        console.log(chalk.dim(`       - ${agentName} (in ${agentDirName}/)`));
-      }
-    }
-  }
-
-  // List module agents
-  const bmadCommandsDir = path.join(projectDir, '.claude', 'commands', 'bmad');
-  if (await fs.pathExists(bmadCommandsDir)) {
-    console.log(chalk.dim('     Module agents:'));
-    const modules = await fs.readdir(bmadCommandsDir);
-
-    for (const module of modules) {
-      const agentsDir = path.join(bmadCommandsDir, module, 'agents');
-
-      if (!(await fs.pathExists(agentsDir))) {
-        continue;
-      }
-
-      const files = await fs.readdir(agentsDir);
-
-      for (const file of files) {
-        if (file.endsWith('.agent.yaml')) {
-          const agentName = file.replace('.agent.yaml', '');
-          console.log(chalk.dim(`       - ${agentName} (${module})`));
-        }
-      }
-    }
-  }
-}
diff --git a/tools/cli/commands/list.js b/tools/cli/commands/list.js
deleted file mode 100644
index de2bd465..00000000
--- a/tools/cli/commands/list.js
+++ /dev/null
@@ -1,40 +0,0 @@
-const chalk = require('chalk');
-const { Installer } = require('../installers/lib/core/installer');
-
-const installer = new Installer();
-
-module.exports = {
-  command: 'list',
-  description: 'List available modules',
-  options: [],
-  action: async () => {
-    try {
-      const result = await installer.getAvailableModules();
-      const { modules, customModules } = result;
-
-      console.log(chalk.cyan('\n📦 Available BMAD Modules:\n'));
-
-      for (const module of modules) {
-        console.log(chalk.bold(`  ${module.id}`));
-        console.log(chalk.dim(`    ${module.description}`));
-        console.log(chalk.dim(`    Version: ${module.version}`));
-        console.log();
-      }
-
-      if (customModules && customModules.length > 0) {
-        console.log(chalk.cyan('\n🔧 Custom Modules:\n'));
-        for (const module of customModules) {
-          console.log(chalk.bold(`  ${module.id}`));
-          console.log(chalk.dim(`    ${module.description}`));
-          console.log(chalk.dim(`    Version: ${module.version}`));
-          console.log();
-        }
-      }
-
-      process.exit(0);
-    } catch (error) {
-      console.error(chalk.red('Error:'), error.message);
-      process.exit(1);
-    }
-  },
-};
diff --git a/tools/cli/commands/status.js b/tools/cli/commands/status.js
deleted file mode 100644
index 34ce22d0..00000000
--- a/tools/cli/commands/status.js
+++ /dev/null
@@ -1,47 +0,0 @@
-const chalk = require('chalk');
-const { Installer } = require('../installers/lib/core/installer');
-
-const installer = new Installer();
-
-module.exports = {
-  command: 'status',
-  description: 'Show installation status',
-  options: [['-d, --directory <path>', 'Installation directory', '.']],
-  action: async (options) => {
-    try {
-      const status = await installer.getStatus(options.directory);
-
-      if (!status.installed) {
-        console.log(chalk.yellow('\n⚠️  No BMAD installation found in:'), options.directory);
-        console.log(chalk.dim('Run "bmad install" to set up BMAD Method'));
-        process.exit(0);
-      }
-
-      console.log(chalk.cyan('\n📊 BMAD Installation Status\n'));
-      console.log(chalk.bold('Location:'), status.path);
-      console.log(chalk.bold('Version:'), status.version);
-      console.log(chalk.bold('Core:'), status.hasCore ? chalk.green('✓ Installed') : chalk.red('✗ Not installed'));
-
-      if (status.modules.length > 0) {
-        console.log(chalk.bold('\nModules:'));
-        for (const mod of status.modules) {
-          console.log(`  ${chalk.green('✓')} ${mod.id} (v${mod.version})`);
-        }
-      } else {
-        console.log(chalk.bold('\nModules:'), chalk.dim('None installed'));
-      }
-
-      if (status.ides.length > 0) {
-        console.log(chalk.bold('\nConfigured IDEs:'));
-        for (const ide of status.ides) {
-          console.log(`  ${chalk.green('✓')} ${ide}`);
-        }
-      }
-
-      process.exit(0);
-    } catch (error) {
-      console.error(chalk.red('Error:'), error.message);
-      process.exit(1);
-    }
-  },
-};
diff --git a/tools/cli/commands/uninstall.js b/tools/cli/commands/uninstall.js
deleted file mode 100644
index 1834ae47..00000000
--- a/tools/cli/commands/uninstall.js
+++ /dev/null
@@ -1,44 +0,0 @@
-const chalk = require('chalk');
-const path = require('node:path');
-const { Installer } = require('../installers/lib/core/installer');
-const { UI } = require('../lib/ui');
-
-const installer = new Installer();
-const ui = new UI();
-
-module.exports = {
-  command: 'uninstall',
-  description: 'Remove BMAD installation',
-  options: [
-    ['-d, --directory <path>', 'Installation directory', '.'],
-    ['--force', 'Skip confirmation prompt'],
-  ],
-  action: async (options) => {
-    try {
-      const bmadPath = path.join(options.directory, 'bmad');
-
-      if (!options.force) {
-        const { confirm } = await ui.prompt([
-          {
-            type: 'confirm',
-            name: 'confirm',
-            message: `Are you sure you want to remove BMAD from ${bmadPath}?`,
-            default: false,
-          },
-        ]);
-
-        if (!confirm) {
-          console.log('Uninstall cancelled.');
-          process.exit(0);
-        }
-      }
-
-      await installer.uninstall(options.directory);
-      console.log(chalk.green('\n✨ BMAD Method has been uninstalled.'));
-      process.exit(0);
-    } catch (error) {
-      console.error(chalk.red('Uninstall failed:'), error.message);
-      process.exit(1);
-    }
-  },
-};
diff --git a/tools/cli/commands/update.js b/tools/cli/commands/update.js
deleted file mode 100644
index 19ae5646..00000000
--- a/tools/cli/commands/update.js
+++ /dev/null
@@ -1,28 +0,0 @@
-const chalk = require('chalk');
-const { Installer } = require('../installers/lib/core/installer');
-
-const installer = new Installer();
-
-module.exports = {
-  command: 'update',
-  description: 'Update existing BMAD installation',
-  options: [
-    ['-d, --directory <path>', 'Installation directory', '.'],
-    ['--force', 'Force update, overwriting modified files'],
-    ['--dry-run', 'Show what would be updated without making changes'],
-  ],
-  action: async (options) => {
-    try {
-      await installer.update({
-        directory: options.directory,
-        force: options.force,
-        dryRun: options.dryRun,
-      });
-      console.log(chalk.green('\n✨ Update complete!'));
-      process.exit(0);
-    } catch (error) {
-      console.error(chalk.red('Update failed:'), error.message);
-      process.exit(1);
-    }
-  },
-};